Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001185145.1_202015-07- 22] 1,605 sequences; 67,656,513 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1285 127 2e-24 seq1059 127 2e-24 seq1057 118 1e-21 seq1068 114 2e-20 seq1539 113 5e-20 >seq1285 Length=126460 Score = 127 bits (140), Expect = 2e-24 Identities = 128/164 (78%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 119533 GCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCAC 119592 |||| |||||||| ||||||||||||||||| ||||| ||||| | |||||||||||||| Sbjct 51277 GCTCGTTACTGAAACAAAGTCCAGGCATGAGGCCTCTCTTCTTCAACCAAAAGATGGCAC 51336 Query 119593 AAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAA 119652 |||| ||||| || ||||||||||||||| ||| || || | || || | ||||| Sbjct 51337 AAAAGGAACCAGAGAAAAAGATGCCCTCCACAGCGGCAAAGGCCACGAGCCGGTGAGCAA 51396 Query 119653 A-AGGTCGAGACTTGTCGAACCACTTGAGAGCCCAGTTGGCCTT 119695 | |||| | || || | |||||||| ||||| | ||||| Sbjct 51397 AGCCGTCG-GGGTTTTCTATCCACTTGATGGCCCACTCAGCCTT 51439 >seq1059 Length=95284 Score = 127 bits (140), Expect = 2e-24 Identities = 288/428 (67%), Gaps = 14/428 (3%) Strand=Plus/Minus Query 109411 AGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGT 109470 || || ||||| |||||||| | || |||||| ||||| | ||||| || | ||| Sbjct 58214 AGGTAGTACATTCCCGTTTTCAAGCCCTTCTTCCAAGCGTAAAAGTGCATCGAGGTGAGC 58155 Query 109471 TTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGA 109530 |||| || | || || || || ||| | ||| ||||||||| || Sbjct 58154 TTGGCAAAGGAGGGGGCCTTGATGTGCACGTTGAAGCTCTGGCTCTGATCGATAAACGCC 58095 Query 109531 CCACGATCAGCCGCCATGTCGATGA---TACACTTTTGGCTAATTTCCCAGACAGTCTTG 109587 || ||||| |||||||||||||| | ||| |||| | ||||| || |||||| Sbjct 58094 CCTCGATCCGCCGCCATGTCGATCAAGGTACG---TTGGGACACCTCCCACACGGTCTTG 58038 Query 109588 TACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACC---AGCC 109644 |||| ||||| || | || || ||| | | || ||||| |||||| |||| Sbjct 58037 TACAGCTTCTTAATGTGTTCCGGGATGCAGGCAAGGTGTTGAACAGAGCCGTTGTGAGCC 57978 Query 109645 TTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT-CAAC 109703 |||| | | ||||| ||| ||| || || | ||| | || || | || | Sbjct 57977 ---ACCAGTTGGTTCTTCAGCTCGGCGCTCCACAGGCCTAAGTTTCTCAGGTCTTGCATC 57921 Query 109704 AAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGT 109763 ||| ||| |||||| | | || || ||||| | |||| || ||||||||| | Sbjct 57920 AAGTGGCT-GTTGACAATGGTGAAGTCTCCAGCCAAGATGCGGCGAGAGTAGATGTTGGA 57862 Query 109764 CGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCAT 109823 |||||||| || || |||||||||||||| ||||| || | ||||| ||||| ||||| Sbjct 57861 AGTGTAGGGCTCAAAGCACTCATTGTTGCCGAGGATCTGCGAGGTGGAGGCTGTAGGCAT 57802 Query 109824 GGGAGCCA 109831 |||||||| Sbjct 57801 GGGAGCCA 57794 >seq1057 Length=235048 Score = 118 bits (130), Expect = 1e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| || ||| | ||||||||| |||||||| || ||||||| |||||| Sbjct 119801 GCAAAGTCACAATGCATGCCTTCATCCTTGCTTATGAGCTCGTTGCTGAAGCTGAGTCCA 119860 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 ||||| || ||||||||||| ||||| |||||||| || || || || ||||||||| Sbjct 119861 GGCATCAGCCCTCTTTTCTTCAGCCAGAAGATGGCGCAGAAGGAACCCGAGAAGAAGATG 119920 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCAC 119675 || ||||| ||| || |||| || ||| |||||||| | | | ||| || | ||| Sbjct 119921 CCTTCCACTGCGGCAAAGGCGATGAGCCGCAGAGCAAAAGCTTGTGGCTTTTCTATCCAA 119980 Query 119676 TTGAGAGCCCAGTTGGCCTT 119695 || ||||| | |||||| Sbjct 119981 CGCAGCGCCCATTCGGCCTT 120000 >seq1068 Length=23690 Score = 114 bits (126), Expect = 2e-20 Identities = 287/428 (67%), Gaps = 16/428 (4%) Strand=Plus/Plus Query 109411 AGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGT 109470 || || ||||| |||||||| | || |||||| ||||| | ||||| || | ||| Sbjct 22747 AGGTAGTACATTCCCGTTTTCAATCCCTTCTTCCAAGCGTAAAAGTGCATCGAGGTGAGC 22806 Query 109471 TTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGA 109530 |||| || | || || || || ||| | ||| ||||||||| || Sbjct 22807 TTGGCAAAGGAGGGGGCCTTGATGTGCACGTTGAAGCTCTGGCTCTGATCGATAAACGCC 22866 Query 109531 CCACGATCAGCCGCCATGTCGATGA---TACACTTTTGGCTAATTTCCCAGACAGTCTTG 109587 || ||||| |||||||||||||| | ||| |||| | ||||| || |||||| Sbjct 22867 CCTCGATCCGCCGCCATGTCGATCAAGGTACG---TTGGGACACCTCCCACACGGTCTTG 22923 Query 109588 TACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACC---AGCC 109644 |||| ||||| || | || || ||| | | || ||||| |||||| |||| Sbjct 22924 TACAGCTTCTTAATGTGTTCCGGGATGCAGGCAAGGTGTTGAACAGAGCCGTTGTGAGCC 22983 Query 109645 TTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT-CAAC 109703 |||| | | ||||| ||| ||| || || | ||| | || || | || | Sbjct 22984 ---ACCAGTTGGTTCTTCAGCTCGGCGCTCCACAGGCCCAAGTTTCTCAGGTCTTGCATC 23040 Query 109704 AAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGT 109763 ||| ||| |||||| | | || || ||||| | |||| || ||||||||| | Sbjct 23041 AAGTGGCT-GTTGACAATGGTGAAGTCTCCAGCCAAGATGCGGCGAGAGTAGATGTTGGA 23099 Query 109764 CGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCAT 109823 |||||||| || || |||||||||||||| ||||| || | ||||| ||||| |||| Sbjct 23100 -GTGTAGGGCTCAAAGCACTCATTGTTGCCGAGGATCTGCGAGGTGGAGGCTGT-AGCAT 23157 Query 109824 GGGAGCCA 109831 |||||||| Sbjct 23158 GGGAGCCA 23165 >seq1539 Length=27205 Score = 113 bits (124), Expect = 5e-20 Identities = 120/155 (77%), Gaps = 4/155 (3%) Strand=Plus/Minus Query 119533 GCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCAC 119592 ||||||||||||| |||||||||||||| || ||||| ||||| | |||||||||||||| Sbjct 26214 GCTCATTACTGAAACAAAGTCCAGGCATAAGGCCTCTCTTCTTCAACCAAAAGATGGCAC 26155 Query 119593 AAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAA 119652 |||| ||||| || |||||||| ||||| ||||| || | || || | ||||| Sbjct 26154 AAAAGGAACCAGAGAAAAAGATGCC--CCACAGCAGCGAAGGCCACGAGCCGGTGAGCAA 26097 Query 119653 A-AGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 | |||| | || || | |||||||| ||||| Sbjct 26096 AGCCGTCG-GGGTTTTCTATCCACTTGATGGCCCA 26063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588964183669000