Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001185145.1_202015-07- 22] 1,605 sequences; 67,656,513 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq824 96.9 3e-14 seq942 89.7 4e-12 seq372 87.8 1e-11 seq288 87.8 1e-11 seq2 87.8 1e-11 >seq824 Length=170617 Score = 96.9 bits (106), Expect = 3e-14 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || || || || || || ||||| || || || || ||||||||| Sbjct 110208 GCCGTCATCACGGTGCCTGCCTACTTCAACGACTCGCAGCGAGTGGCCACGAAAGATGCT 110149 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || ||| |||||||| |||| ||||||| ||||| ||||||||||| ||||| || Sbjct 110148 GGCGCTATCGCTGGACTGGATGTCATTCGTATCATCAACGAACCTACTGCCGCTGCCATT 110089 Query 550520 GCATATGGACTTGATAAA 550537 || ||||| ||||| ||| Sbjct 110088 GCCTATGGCCTTGAGAAA 110071 >seq942 Length=135290 Score = 89.7 bits (98), Expect = 4e-12 Identities = 154/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 |||||| || || | || ||||| || || ||||||||||||||| ||||| | Sbjct 53085 GAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAATCAGCGAGAGTGCG 53026 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 || ||||| || |||||||| || || | | ||||| || || ||||| ||||| Sbjct 53025 ACCGTCCTCAAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCTTC 52966 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGAG 563434 || || || || || || || || ||| || || || | | | || ||| || | Sbjct 52965 CTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGGAGCTCTCCAC-TTCCAGGG 52907 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| ||| || || |||||||| || ||||| || |||||| Sbjct 52906 TAATAGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCATA 52866 Score = 86.0 bits (94), Expect = 5e-11 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 |||||||| || | |||||||| ||| | ||| || ||||| || |||| || | Sbjct 53312 AGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGG--ATGTTGTAGTCGGCTAAGGTAC 53255 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 ||| || || || || ||||| || || || | ||||| ||||| ||||| |||| Sbjct 53254 GACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTT 53195 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433 | || || || || || || || || ||| || || || | | | || ||| || Sbjct 53194 CCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGGAGCTC-TCCACTTCCAGG 53136 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 |||| ||| || ||||||||||| || ||||| || |||||| Sbjct 53135 GTAATAGTCTTGCCAGTAAGAGTCTTTACGAAGATCTGCATA 53094 >seq372 Length=15075 Score = 87.8 bits (96), Expect = 1e-11 Identities = 157/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| ||||| || || | || ||||| || || ||||||||||||||| ||||| Sbjct 1635 CCTCAGACGAAGGACCAAGTGGAGGGTTGACTCCTTCTGAATATTGTAATCAGCGAGAGT 1694 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | ||| || || || || ||||||| || || | |||||| || ||||| || || Sbjct 1695 GCGGCCATC-TCCAGCTG-CTTGCGGCAAAGATGAGGCGTTGCTGGTCGGGAGGGATGCC 1752 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGA 563431 ||| || || || || || || || || ||| || || || | | | || ||| | Sbjct 1753 TTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGGAGCTCTCCAC-TTCCA 1811 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | |||| ||| || || |||||||| || ||||| || |||||| Sbjct 1812 GGGTAATAGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCATA 1855 >seq288 Length=27758 Score = 87.8 bits (96), Expect = 1e-11 Identities = 156/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||||||| || | || ||||| ||| | ||| || ||||| || || ||||| Sbjct 376 GAGACGGAGGACCAAGTGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCGGCCAGAGTG 319 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||| || || || || |||||||| || || | |||||||||||| ||||| || Sbjct 318 CGACCATCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGTTGCTGATCAGGGGGAATGCCC 259 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAG 563432 || || || || || ||||| || || |||||| || || | | | || | | || Sbjct 258 TCCTTGTCCTGGATCTTTTGCTTGACGTTCTCAATGGTGTCGGAGCTCTCCACCTCCAAG 199 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 |||| || |||||||| | || || ||||| || |||||| Sbjct 198 -GTAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCATA 157 >seq2 Length=914981 Score = 87.8 bits (96), Expect = 1e-11 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 || || || || || |||||||| || || | |||||||||||||| || ||||| || Sbjct 65957 TCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGATCAGGAGGGATGCCTTCCTTG 66016 Query 563380 TCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGAGTAAC 563438 || || || |||||||| || ||| || || || | | | || ||| || |||| Sbjct 66017 TCCTGGATCTTTTGTTTGACGTTCTCGATGGTGTCGGAGCTCTCCAC-TTCCAGGGTAAT 66075 Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| || || |||||||| || ||||| || |||||| Sbjct 66076 AGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCATA 66112 Score = 86.0 bits (94), Expect = 5e-11 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 || || ||||| |||||||| || || || | |||||| || ||||| || ||||| || Sbjct 66413 TCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGTTGCTGGTCGGGAGGGATGCCTTCCTTG 66472 Query 563380 TCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAAC 563438 || || || || || || || ||| || || || | ||| | || |||||| |||| Sbjct 66473 TCCTGGATCTTCTGCTTGACGTTCTCGATGGTGTCGGA-TGACTCCACTTCGAGGGTAAT 66531 Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || || || || || |||||||||||||| Sbjct 66532 GGTCTTTCCCGTGAGGGTCTTCACGAAAATTTGCAT 66567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029211120361450