Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001185145.1_202015-07- 22] 1,605 sequences; 67,656,513 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1059 269 5e-67 seq1285 246 6e-60 seq1539 201 2e-46 seq1057 131 3e-25 seq1068 98.7 2e-15 >seq1059 Length=95284 Score = 269 bits (298), Expect = 5e-67 Identities = 732/1102 (66%), Gaps = 49/1102 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTG-TTGAGT--------CTCTTG 221467 |||| |||||| ||| |||||||||||||| |||| | ||||| |||||| Sbjct 57614 GTCACCGCAGCGAAGTAAATGGTCTCAAAGAT-ATCTCGGTTGAGGTCAGCAGCCTCTTG 57556 Query 221468 GC-CTCGGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTAC 221526 || ||| |||| | ||||| |||| ||||||||| || || || || || Sbjct 57555 GCTCTCCC---------AGGGGAAACGCATCATCAAAAAGACGTCCGCAAGGCCTTGCAC 57505 Query 221527 TCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAA 221586 || || |||||||| | || | ||| || | || || |||||||| | Sbjct 57504 ACCAATTCCGATGGGACGATGACGAAGGTTCGAGTTGCGAGCCTCGACAACGGGATAGTA 57445 Query 221587 GTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTC-AGCT 221645 ||||||||| || | ||||||||||| |||||| ||| |||||||||||| | | | Sbjct 57444 GTTGACGTCAATGACCTTGTTGAGGTTGCGAGTGACGACCTTAACCACCTCGAACAAACG 57385 Query 221646 TCTGGTGATTGAACACCAACTC-GCCGCCGT---CGTGGAGGGGTTCCACAAAAGCGTTT 221701 || ||| | || | ||| ||| | || ||| || || |||||| | Sbjct 57384 GCT-GTG-GTCAAATCGGGCTCGGCCACTGTCTGCGTCGATGG---ACACAAACTTGGGA 57330 Query 221702 AGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATC 221761 || || | || ||||| ||||| ||||| ||||||||| ||| |||| |||||| Sbjct 57329 AGAGCGAGAGAAGCGAGGTTGCACACAGCCACTTCGTCCTTGGAGGTGTACTCCATGATC 57270 Query 221762 TCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTG 221821 || || || |||||||| | ||||| || |||| | || || |||||||| ||| Sbjct 57269 TCCGTGCAAAGGTTGCTTGAACGAATGGTGCCGAGGTTCTGTTGGTTGGACTTGCGGTTG 57210 Query 221822 GCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTG 221881 | ||||||||| ||||| |||| ||| ||||| | || | |||| || | Sbjct 57209 CACGAGTCCTTGTATAGCATGTAGGGCGTGCCGGTCTCTATCTCGCTCTCCAGGATGGCG 57150 Query 221882 TCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCG 221941 |||||| ||| ||| | || ||||| || || ||||| || ||| || | Sbjct 57149 AACCAGAGCTCTTGGGCCTTAACGCTCCTCCTGGCTCGGCCCTC---CTGTTCGTATCGA 57093 Query 221942 GTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGA 222001 || |||||| ||||||| || || | | || ||| ||| ||| | |||| Sbjct 57092 GTGTAGAGCGCCTCAAACTCCTCTCCCCAGACATCAGCCAAGCCGGGAGCTTCGTTGGGA 57033 Query 222002 CACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCAC 222061 || | ||| ||| | || ||| | || | || |||||| |||||||| | ||| Sbjct 57032 CAAAACAGGGACCACTCCTGATTGCTCTCCACTCGCTTCATGAATAGGTCCGGAACCCAG 56973 Query 222062 AGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCC 222121 ||||| | |||||| ||||||| ||| |||||||| ||||| ||| ||| |||| ||| Sbjct 56972 AGCGCGTAAAAGAGGTCTCTGGCGCGCAGCTCCTCCTTGCCGTGGTTCTTCTTCAGCTCC 56913 Query 222122 AAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGC 222181 | |||||| |||| ||| |||||||| ||||||| ||||| || | ||| || || Sbjct 56912 AGAAACTCGAAAACGTCCGCGTGCCATGGCTCCAAGTAGACAGCAAAAGCTCCTTTGCGT 56853 Query 222182 TTGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTAC 222240 ||| || || || || || || ||| | |||| |||| |||||| |||| | Sbjct 56852 TTGCCTCCTCCTTGGTCGACGTATCT-GGCAGTGTCGTTAAAGACGCGAAGCATCGGGAT 56794 Query 222241 CAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGC-CGGCCCTCAGGTTAC 222299 || ||||| || || || || || ||||| || || ||| | || | Sbjct 56793 GAGACCGTTCGACGTGCCATTAGTTCCACGGATGTA-GCTGTGCGAGGCAC---GGATTG 56738 Query 222300 TG-GCAGAC--ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAG 222356 || | | | | |||||| ||||| ||| || ||||||| |||||| ||| || | Sbjct 56737 TGTGTACGCTGAGGCCGATGCCACCAGCGGCCTTGGAGATCAAGGCGCATTGCTTTAGGG 56678 Query 222357 TGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCT 222416 |||| ||||||||| || ||||||| | | | |||| ||| || || || | | Sbjct 56677 TGTCGTAGATGCCCTCGATGCTGTCCTCCCTCATCGTGAGCAAAAAGCAGGAAGAGAGTT 56618 Query 222417 GAG---ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCC 222473 | | | ||| | |||||| || || ||||| ||||||| ||||||||| Sbjct 56617 GCGGCCGCTCTGTG---CCGGCGTTGAAGAGAGTGGGGGTGGCGTGAGTAAAGTAGAGGT 56561 Query 222474 TAGACATCAGATCGTACGTCTC 222495 | ||||| |||| ||| ||||| Sbjct 56560 TGGACATGAGATTGTAGGTCTC 56539 >seq1285 Length=126460 Score = 246 bits (272), Expect = 6e-60 Identities = 572/858 (67%), Gaps = 35/858 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | | |||||||||||| ||| | || || Sbjct 51787 ATCTGGGAGATGTACAAGAAGGCCGAGGCCAGCTTCTGGACCGCCGAGGAGGTGGACCTT 51728 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 ||| | || | || |||| | || || | ||||||| ||||| ||| || Sbjct 51727 GCCCAAGATCTCACCGACTGGAAGAAACTCTCTGAGGACGAGCGCTATTTTATCACCCAC 51668 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || |||| |||||||| ||||| || || || || ||||| || || | ||| Sbjct 51667 GTCCTGGCCTTCTTTGCCGCCTCGGACGGCATCGTTGTTGAGAACTTGGCCGTCCGCTTC 51608 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | | ||| ||||| | ||||| || |||||||| || ||||| ||||| || Sbjct 51607 ATGAAGGAGGTGCAAGTCCCCGAGGCTCGCTGCTTCTACGGCTTTCAGATCGCCATTGAG 51548 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCC 25773 ||| | ||||| ||| |||| || |||||||| || ||| | | ||| Sbjct 51547 AATATCCACTCGGAGATGTACTCC---CTTCTGATCGACACCTACGTGAAGGACCCATTG 51491 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| || || || || ||||||||| | | || | | || | |||||| | Sbjct 51490 GAGAAGGACCGCCTCTTCAACGCCATCGAGACCGTGCCTACCGTCCGAAAGAAGGCTGAG 51431 Query 25834 TGGGCCATGAAGTGGATC-AACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||||| |||||||| || | || || ||| ||| | ||||| || ||||| Sbjct 51430 TGGGCCATCAAGTGGATAGAAAACCCCGACGGCT----TTGCTCACCGGCTCGTGGCCTT 51375 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952 ||| ||||||||||||||||||||| ||||| ||| |||||||| ||| | ||| | Sbjct 51374 TGCCGCTGTGGAGGGCATCTTTTTCTCTGGTTCCTTTTGTGCCATCTTTTGGTTGAAGAA 51315 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 || || |||||| || || | || ||||||| ||||||||||||||||| | Sbjct 51314 GAGAGGCCTCATGCCTGGACTTTGTTTCAGTAACGAGCAGATCAGCAGGGACGAGGGCAT 51255 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC---ACAAACCTTCTCA 26069 ||| | || ||||||||||| ||||||| || || ||| ||| ||| ||| Sbjct 51254 GCACTGCGACTTTGCCTGCCTCCTCTACA------ACATGATCCAGAACAGACC--CTCC 51203 Query 26070 AGAGACCGT---CTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126 | ||| || | || || || |||||||||||||| || ||||||||| Sbjct 51202 AACGACTGTGCCCACCAAGATTATTGCTGAGGCTGTGGAGATTGAAAAGGAGTTTGTGAG 51143 Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186 | ||||||||| | |||||| |||| |||||||| Sbjct 51142 CGAGTCCCTTCCAGTGAGGCTCATCGGCATGAACGCCGAGCTCATGTGCCAGTACATTGA 51083 Query 26187 GTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACAGTACGC- 26242 || |||||| |||| ||||| ||| | || || || || ||| |||||| |||| Sbjct 51082 GTTTGTGGCGGACCGCCTGCTGGTGGC-CCTCGG-CT-GCGAGAAGATCTACA--ACGCT 51028 Query 26243 -CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAA 26301 | |||||||| |||| ||||| ||| || |||||||| ||||||||||| || || Sbjct 51027 ACGAACCCGTTTGACTGGATGGAGCTCATCTCCTTGGAAGGCAAGACCAACTTTTTCGAG 50968 Query 26302 AAGAGGGTCGGCGACTAT 26319 | | | || || || ||| Sbjct 50967 AGGCGCGTGGGAGAGTAT 50950 >seq1539 Length=27205 Score = 201 bits (222), Expect = 2e-46 Identities = 563/856 (66%), Gaps = 38/856 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | | |||||||||||| ||| | || || Sbjct 25708 ATCTGGGAGATGTACAAGAAGGCCGAGGCCAGCTTCTGGACCGCCGAGGAGGTGGACCTT 25767 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 ||| | || | || |||| | || || | ||||||| ||||| ||| || Sbjct 25768 GCCCAAGATCTCACCGACTGGAAGAAGCTCTCTGAGGACGAGCGCTATTTTATCACCCAC 25827 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || |||| |||||||| ||||| || || || || ||||| || || | ||| Sbjct 25828 GTCCTGGCCTTCTTTGCCGCCTCGGACGGAATCGTTGTGGAGAACTTGGCCGTCCGCTTC 25887 Query 25657 ACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715 | | ||| ||||| |||| | |||| || |||||||| || ||||| ||||| || Sbjct 25888 ATGAAGGAGGTGCAAGTACCCG-AGGCTCGCTGCTTCTACGGCTTTCAGATCGCCATTGA 25946 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGC 25772 ||| | ||||| ||| |||| || |||||| || ||| | | ||| | Sbjct 25947 GAATATCCACTCGGAGATGTACTCCC----TCTGATCGACACCTACGTGAAGGACC-CTT 26001 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 |||| || || || || ||||||||| | | || | | || | ||| || Sbjct 26002 GGAGAAGGACCGCCTCTTCAACGCCATCGAGACCGTGCCTACCGTCCGAAAGAAAGCTGA 26061 Query 25833 GTGGGCCATGAAGTGGATC-AACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||||||| |||||||| || | || || ||| ||| | ||||| || |||| Sbjct 26062 GTGGGCCATCAAGTGGATAGAAAACCCCGACGGCT----TTGCTCACCGGCTCGTGGCCT 26117 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGC 25951 | |||||||||| |||||||||||| ||||| ||| |||||||| ||| | ||| Sbjct 26118 TCGCTGCTGTGG--GGCATCTTTTTCTCTGGTTCCTTTTGTGCCATCTTTTGGTTGAAGA 26175 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 ||| || ||||| || || | || || |||| ||||||||||||||||| Sbjct 26176 AGAGAGGCCTTATGCCTGGACTTTGTTTCAGTAATGAGCAGATCAGCAGGGACGAGGGCA 26235 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC---ACAAACCTTCTC 26068 | ||| | || ||||||||||| ||||||| || || ||| ||| ||| || Sbjct 26236 TGCACTGTGACTTTGCCTGCCTCCTCTACA------ACATGATCCAGAACAGACCCTCCA 26289 Query 26069 AAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNN 26128 | || | | || ||||| || || |||||||| |||||||||||| Sbjct 26290 ACGACATGCCCACCAAGATCATTGCTGAAGCCGTGGAGATTGAGAAGGAGTTTGTGAGCG 26349 Query 26129 NNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGT 26188 | ||||||||| | |||||| |||| |||||||||| Sbjct 26350 AGTCCCTTCCAGTGAGGCTCATCGGCATGAACGCCGAGCTCATGTGCCAGTACATTGAGT 26409 Query 26189 ATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACAGTACGC--C 26243 |||||| |||| ||||| ||| | || || || || ||| |||||| |||| | Sbjct 26410 TTGTGGCGGACCGCCTGCTGGTGGC-CCTCGG-CT-GCGAGAAGATCTACA--ACGCTAC 26464 Query 26244 TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAA 26303 |||||||| |||| |||| | | | |||||||| ||||||||||| || || | Sbjct 26465 GAACCCGTTTGACTGGATGG--AGCTCTCCCTTGGAAGGCAAGACCAACTTTTTCGAGAG 26522 Query 26304 GAGGGTCGGCGACTAT 26319 | | || || || ||| Sbjct 26523 GCGCGTGGGAGAGTAT 26538 >seq1057 Length=235048 Score = 131 bits (144), Expect = 3e-25 Identities = 317/470 (67%), Gaps = 15/470 (3%) Strand=Plus/Minus Query 25573 GACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTG 25632 ||||| | || ||| ||||| |||||||||| || || || ||||| ||||| || ||| Sbjct 120252 GACGAACGCCACTTTATCAAGCACGTGTTGGCCTTTTTCGCTGCCTCGGATGGCATCGTG 120193 Query 25633 AACGAGAATCTGTGC-GAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTT 25691 ||||| || ||| | | |||| | |||||| || |||||| || || Sbjct 120192 GTGGAGAACCT-TGCTGCCCGCTTCATGAAGGAAGTTCAACTGCCGGAGGCACGTTGCTT 120134 Query 25692 CTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT 25751 |||||| || || || ||||| || || | ||||| ||| |||| | ||| || || Sbjct 120133 CTACGGCTTTCAAATCGCCATGGAGAACATCCACTCGGAGATGTACTC---GCTGCTCAT 120077 Query 25752 G---ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACAT 25808 || ||| | | |||||| || | | | ||| ||| ||||| ||| | Sbjct 120076 CGACACCTACGTCAAAGACGTGAAAGAAAAGGCTAAGCTCTTTAACGCCATTGAGACGGT 120017 Query 25809 ACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATC-AACAGCCAGAGCGCTA 25867 || ||| | |||| |||||| ||||| || ||||| || ||||| | ||| Sbjct 120016 GCCTAGCGTGAAGAAGAAGGCCGAATGGGCGCTGCGTTGGATAGAAAAGCCACAA-GCT- 119959 Query 25868 CGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGT 25927 |||| |||||| | |||||||| || ||||| |||||||| ||| ||||| | Sbjct 119958 --TTTGCTCTGCGGCTCATCGCCTTTGCCGCAGTGGAAGGCATCTTCTTCTCGGGTTCCT 119901 Query 25928 T-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAAC 25986 | |||| ||||||||||||| ||| | | ||| ||||| || || ||| |||| Sbjct 119900 TCTGCG-CCATCTTCTGGCTGAAGAAAAGAGGGCTGATGCCTGGACTCAGCTTCAGCAAC 119842 Query 25987 GAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036 |||||||| |||| ||| || || | || | || ||||| || |||| Sbjct 119841 GAGCTCATAAGCAAGGATGAAGGCATGCATTGTGACTTTGCTTGTATGCT 119792 >seq1068 Length=23690 Score = 98.7 bits (108), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 18/230 (8%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTG-TTGAGT------CTCTTGGC 221469 ||||| |||||| ||| |||||||||||||| |||| | ||||| |||||||| Sbjct 23345 GTCAGCGCAGCGAAGTAAATGGTCTCAAAGAT-ATCTCGGTTGAGGTCAGCCCTCTTGGC 23403 Query 221470 -CTCGGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTC 221528 ||| |||| | ||||| |||| ||||||||| || || || || || | Sbjct 23404 TCTCCC---------AGGGGAAACGCATCATCAAAAAGACGTCCGCAAGGCCTTGCACAC 23454 Query 221529 CGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGT 221588 | || |||||||| | || | ||| || | || || |||||||| ||| Sbjct 23455 CAATTCCGATGGGACGATGACGAAGGTTCGAGTTGCGAGCCTCGACAACGGGATAGTAGT 23514 Query 221589 TGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCG 221638 ||||||| || | ||||||||||| |||||| ||| |||||||||||| Sbjct 23515 TGACGTCAATGACCTTGTTGAGGTTGCGAGTGACGACCTTAACCACCTCG 23564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928826165051200