Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001185145.1_202015-07- 22] 1,605 sequences; 67,656,513 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq753 113 3e-19 seq2 107 1e-17 seq1391 98.7 6e-15 seq1090 98.7 6e-15 seq942 98.7 6e-15 seq372 96.9 2e-14 seq151 91.5 1e-12 seq1129 89.7 3e-12 seq917 89.7 3e-12 >seq753 Length=293645 Score = 113 bits (124), Expect = 3e-19 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||| |||||||| || || || || ||||| ||||| || ||||||||| Sbjct 49686 TCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCGGGAGGGATGCCTTCCTTG 49745 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || || |||||||| |||||| ||||||||| |||| | | ||| | ||| || Sbjct 49746 TCCTGGATCTTTTGCTTGACATTTTCAATAGTGTCAGAGGATTCCACTTCCAAGGTGATG 49805 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || |||||||| ||||| ||||| || || Sbjct 49806 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTG 49837 >seq2 Length=914981 Score = 107 bits (118), Expect = 1e-17 Identities = 117/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||| || ||||| || || || || ||||||||||| || ||||||||| Sbjct 65957 TCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGATCAGGAGGGATGCCTTCCTTG 66016 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAAT 480736 || || |||||||||||||| || || || || | | | | | ||| |||||||| Sbjct 66017 TCCTGGATCTTTTGTTTGACGTTCTCGATGGTGTCGGAGCTCTCCA-CTTCCAGGGTAAT 66075 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || ||||| |||||||| ||||| || || Sbjct 66076 AGTCTTGCCGGTAAGAGTCTTGACGAAGATCTG 66108 Score = 98.7 bits (108), Expect = 6e-15 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || ||||||||||| || || || || ||||| || || ||||| || ||||||||| Sbjct 66413 TCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGTTGCTGGTCGGGAGGGATGCCTTCCTTG 66472 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 || || ||||| || ||||| || || || || | || | | ||| |||||||| Sbjct 66473 TCCTGGATCTTCTGCTTGACGTTCTCGATGGTGTCGGATGACTCCA-CTTCGAGGGTAAT 66531 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| ||||| ||||||||||| Sbjct 66532 GGTCTTTCCCGTGAGGGTCTTCACGAAAATTTG 66564 >seq1391 Length=76266 Score = 98.7 bits (108), Expect = 6e-15 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||| || ||||| || || || || ||||| ||||| || ||||||||| Sbjct 37561 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGATCGGGAGGGATGCCTTCCTTG 37620 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAAT 480736 || || |||||||| ||||| || || || || | | | | | ||| |||||||| Sbjct 37621 TCCTGGATCTTTTGCTTGACGTTCTCGATGGTGTCGGAGCTCTCCA-CTTCCAGGGTAAT 37679 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || ||||| |||||||| ||||| || || Sbjct 37680 AGTCTTGCCGGTAAGAGTCTTGACGAAGATCTG 37712 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || | || || ||| || || || ||| |||||||| ||||| Sbjct 37722 ACGGAGACGAAGGACCAAGTGGAGGGTAGACTCCTTCTGAATATTGTAATCAGCGAGAGT 37781 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || ||||| ||||| || || || || | ||| || || ||||| ||||| || Sbjct 37782 GCGACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGGGGAATGCC 37841 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| || ||||| || || || |||||| || |||| | | | || | Sbjct 37842 TTCCTTGTCCTGGATCTTCTGCTTCACGTTTTCAATGGTGTCAGACGACTCGA-CCTCGA 37900 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || ||||| | ||||| ||||| || || Sbjct 37901 GGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTG 37940 >seq1090 Length=245726 Score = 98.7 bits (108), Expect = 6e-15 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||| || ||||| || || || || ||||| ||||| || ||||||||| Sbjct 123662 TCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGATCGGGAGGGATGCCTTCCTTG 123603 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAAT 480736 ||||| ||||| || ||||| || || || || | | | | | || ||| |||||| Sbjct 123602 TCTTGGATCTTCTGCTTGACGTTCTCGATGGTGTCGGAGCTCTCCACTTCCAA-GGTAAT 123544 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| |||||||| |||||||| || Sbjct 123543 GGTCTTGCCGGTAAGAGTCTTGACGAAAATCTG 123511 Score = 87.8 bits (96), Expect = 1e-11 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| ||||| | || | | || || || ||||| || || || || || ||||| Sbjct 123914 TTATAGTCAGCCAAGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGTTGC 123855 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || ||||||||||| ||||||||||| || ||||| || || || || ||||| ||| Sbjct 123854 TGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATAGTGTCA 123795 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | || || || || ||||| || ||||| | ||||| ||||| ||||| Sbjct 123794 GAAGACTCAA-CCTCGAGAGTGATAGTCTTTCCGGTCAAGGTCTTGACGAAGATTTG 123739 >seq942 Length=135290 Score = 98.7 bits (108), Expect = 6e-15 Identities = 132/181 (73%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 480590 AACATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACG 480649 || ||| |||||||| ||||| | || ||||| |||||||| || || || | ||| Sbjct 53049 AATATTGTAATCAGCGAGAGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAAGATCAAACG 52990 Query 480650 TTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGT 480709 || || || || ||||| ||||||||||| || ||||| || || || || || || Sbjct 52989 CTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGT 52930 Query 480710 ATCAGTG-TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTT 480768 || | | | | | ||| ||||||||||| || ||||| |||||||| ||||| || | Sbjct 52929 GTCGGAGCTCTCCA-CTTCCAGGGTAATAGTCTTGCCGGTAAGAGTCTTGACGAAGATCT 52871 Query 480769 G 480769 | Sbjct 52870 G 52870 >seq372 Length=15075 Score = 96.9 bits (106), Expect = 2e-14 Identities = 133/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 480590 AACATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACG 480649 || ||| |||||||| ||||| | | |||| || | ||||| | ||||| || || || Sbjct 1674 AATATTGTAATCAGCGAGAGTGCGGCCATCTCCA-GCTGCTTGCG-GCAAAGATGAGGCG 1731 Query 480650 TTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGT 480709 ||| || || ||||| || ||||||||||| || ||||| || || || || || || Sbjct 1732 TTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGT 1791 Query 480710 ATCAGTG-TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTT 480768 || | | | | | ||| ||||||||||| || ||||| |||||||| ||||| || | Sbjct 1792 GTCGGAGCTCTCCA-CTTCCAGGGTAATAGTCTTGCCGGTAAGAGTCTTGACGAAGATCT 1850 Query 480769 G 480769 | Sbjct 1851 G 1851 >seq151 Length=514231 Score = 91.5 bits (100), Expect = 1e-12 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || |||||||| ||||| | | ||| || || ||||| || || || || || || || Sbjct 238374 TTGTAATCAGCGAGAGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGC 238315 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || ||||| ||||||||||| || |||||||| ||||| || || || ||| Sbjct 238314 TGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTCTCGATGGTGTCA 238255 Query 480714 GTG-TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | | | ||| ||||||||| || || || | ||||| ||||| || || Sbjct 238254 GAGCTCTCCACCTCCAA-GGTAATAGTCTTGCCAGTTAAGGTCTTGACGAAGATCTG 238199 >seq1129 Length=232510 Score = 89.7 bits (98), Expect = 3e-12 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||| ||||| || || | || || ||||| ||||| || ||||||||| Sbjct 106933 TCCTCCAGCTGCTTACCAGCGAAGATCAAGCGCTGCTGATCGGGAGGGATACCTTCCTTG 106874 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 || || |||||||| || || ||||||||||||| | | | ||||| || || Sbjct 106873 TCCTGGATCTTTTGCTTCACGTTCTCAATAGTATCAGAAGACTCGA-CCTCAAGAGTGAT 106815 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| ||||| | |||||| ||||| || || Sbjct 106814 GGTTTTGCCGGTCAAAGTCTTGACGAAGATCTG 106782 Score = 86.0 bits (94), Expect = 4e-11 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 480590 AACATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACG 480649 || ||| |||||||| ||||| | | || || || ||||| || || || || ||||| Sbjct 106733 AATATTGTAATCAGCGAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGACG 106674 Query 480650 TTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGT 480709 || || || || ||||| ||||||||||| || ||||| || || || || || || Sbjct 106673 CTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGT 106614 Query 480710 ATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTT 480768 || | | | | |||||||| || || || || ||||| ||||| ||||| |||| Sbjct 106613 GTCCGAAGACTCCA-CCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTT 106555 Query 480769 G 480769 | Sbjct 106554 G 106554 >seq917 Length=72685 Score = 89.7 bits (98), Expect = 3e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||| ||||| ||||||||||| || ||||| || || ||||| ||||| Sbjct 48047 TCCTCCAGCTGCTTGCCAGCGAAAATAAGACGCTGCTGATCGGGGGGGATTCCCTCCTTA 48106 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || || |||||||| || ||| || || || || | | || ||||| ||| Sbjct 48107 TCCTGGATCTTTTGCTTCACATTCTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATA 48166 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || ||||| ||||| ||||| || || Sbjct 48167 GTTTTGCCTGTGAGCGTCTTCACGAAGATCTG 48198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268110353762540