Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001185145.1_202015-07- 22] 1,605 sequences; 67,656,513 total letters Query= NC_023423.1 Length=610033 Score E Sequences producing significant alignments: (Bits) Value seq1227 127 8e-24 seq720 127 8e-24 >seq1227 Length=12999 Score = 127 bits (140), Expect = 8e-24 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 111433 GCCATCTTCACCTTCAAAGCGAAAGGAATTTCAGGAATCAACTCATTGTGCAGAAGGTCA 111492 ||||||||||| ||| || || ||||| ||||||| | ||| |||||||||| || Sbjct 788 GCCATCTTCACTTTCTTGGCAAACGGAATGACAGGAATGAGCTCGTTGTGCAGAACATCG 729 Query 111493 AACAGAGAACCAAGGGTCATGTACTCCATCACAATGCACATCTTCGGCGGTTTGGTCGAG 111552 |||||||||| || ||||||||||||||| |||||||| ||||| || | || | Sbjct 728 TACAGAGAACCGAGTTGCATGTACTCCATCACTATGCACATGTTCGGTGGCTGAGTGCAA 669 Query 111553 GCGGCCATGAAAAGCACCACGTTGGGGTGGCGCAG 111587 || |||||||| ||||||||||| || || || || Sbjct 668 GCCGCCATGAATAGCACCACGTTTGGATGACGAAG 634 Score = 120 bits (132), Expect = 1e-21 Identities = 177/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 109789 CCAATGAACAGGACGATGTTTGGGTGGTGAAGTTCGGACAACATGGCCATCTCAGCTCGG 109848 ||||| ||||| || ||||| ||||||||||| ||| | | ||||| ||||| ||| Sbjct 2840 CCAATAAACAGAACAATGTTGGGGTGGTGAAGCTCGCTGAGGAAAGCCATTTCAGCACGG 2781 Query 109849 AACTCAAGCAGACGCTTCTCGTCCAACTTTTGCTTAATGAAACGCTTAACGGCAATCTCG 109908 ||||| |||| || |||||| | ||| ||||| ||||| ||| ||||||| || Sbjct 2780 AACTCCAGCATTCGTTTCTCGGAGAGCTTCTGCTTGATGAACTTCTTTACGGCAACGTCC 2721 Query 109909 ACTCCCTTCCATTTTCCATGGAAGACCACTCCGTAAGAACCGAGGCCGATTTGCTTTCCG 109968 ||||| |||||||| | | | |||| | || || || | |||||||| ||| Sbjct 2720 ACTCCTTTCCATTTCGCCTTGTAGACGATGCCATAGCTGCCAACACCGATTTGAGGGCCG 2661 Query 109969 AGCGAGATTTCGTTGAAGTCAATGATCCACCTGCAAAGGTTAGCCGAGGTGAGGAAAGTG 110028 ||| | | || |||| |||||||| | || ||||| || ||||||||| | Sbjct 2660 AGCTGCAGCTGCTTAAAGTTGATGATCCAACGACAGAGGTTGGCGCTGGTGAGGAAGGCA 2601 Query 110029 TCTTCTTTGAA 110039 ||||| ||||| Sbjct 2600 TCTTCCTTGAA 2590 Score = 87.8 bits (96), Expect = 7e-12 Identities = 133/188 (71%), Gaps = 5/188 (3%) Strand=Plus/Minus Query 109486 GTCCAGCAAGGAGTTCCACAGCGTGTCATTGTGGCATTCTCTTCCTTGATGCGAGCAAAG 109545 ||||| |||||||| || || ||||||||||| || || ||||| ||| |||||||| Sbjct 3244 GTCCAACAAGGAGTGCCGCAACGTGTCATTGTTGCGTTTTCTTCTCGGATACGAGCAAAA 3185 Query 109546 CCAAAGTCAGCCACCTTGGTGATGTTTGCGTCGTTGTCAATCAACAGATTAGACGGTTTC 109605 |||||||| || | | | | ||| || | ||||| ||| || || || ||| Sbjct 3184 CCAAAGTCTGCGA---TTTTTACGTTCCAGTTTTCGTCAACCAAAAGGTTGGAGCTCTTC 3128 Query 109606 AGATCACGGTGGACGATGGTGGGTGTGAGAGAGTGAAGGTAGTTAACACCAAGGGC--TG 109663 | ||||| |||| ||| | ||| || ||||||||||||| | ||||| || || Sbjct 3127 AAGTCACGATGGATGATAATAGGTTCCAGCGAGTGAAGGTAGTGGAGGCCAAGCGCAATG 3068 Query 109664 CGCCGTGC 109671 | ||||| Sbjct 3067 CTGCGTGC 3060 >seq720 Length=140915 Score = 127 bits (140), Expect = 8e-24 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 111433 GCCATCTTCACCTTCAAAGCGAAAGGAATTTCAGGAATCAACTCATTGTGCAGAAGGTCA 111492 ||||||||||| ||| || || ||||| ||||||| | ||| |||||||||| || Sbjct 105066 GCCATCTTCACTTTCTTGGCAAACGGAATGACAGGAATGAGCTCGTTGTGCAGAACATCG 105125 Query 111493 AACAGAGAACCAAGGGTCATGTACTCCATCACAATGCACATCTTCGGCGGTTTGGTCGAG 111552 |||||||||| || ||||||||||||||| |||||||| ||||| || | || | Sbjct 105126 TACAGAGAACCGAGTTGCATGTACTCCATCACTATGCACATGTTCGGTGGCTGAGTGCAA 105185 Query 111553 GCGGCCATGAAAAGCACCACGTTGGGGTGGCGCAG 111587 || |||||||| ||||||||||| || || || || Sbjct 105186 GCCGCCATGAATAGCACCACGTTTGGATGACGAAG 105220 Score = 87.8 bits (96), Expect = 7e-12 Identities = 133/188 (71%), Gaps = 5/188 (3%) Strand=Plus/Plus Query 109486 GTCCAGCAAGGAGTTCCACAGCGTGTCATTGTGGCATTCTCTTCCTTGATGCGAGCAAAG 109545 ||||| |||||||| ||||| ||||||||||| || || ||||| ||| |||||||| Sbjct 102616 GTCCAACAAGGAGTGCCACAACGTGTCATTGTTGCGTTTTCTTCTCGGATACGAGCAAAA 102675 Query 109546 CCAAAGTCAGCCACCTTGGTGATGTTTGCGTCGTTGTCAATCAACAGATTAGACGGTTTC 109605 || ||||| || | | | | ||| || | ||||| ||| || || || ||| Sbjct 102676 CCGAAGTCTGCGA---TTTTTACGTTCCAGTTTTCGTCAACCAAAAGGTTGGAGCTCTTC 102732 Query 109606 AGATCACGGTGGACGATGGTGGGTGTGAGAGAGTGAAGGTAGTTAACACCAAGGGC--TG 109663 | ||||| |||| ||| | ||| || ||||||||||||| | ||||| || || Sbjct 102733 AAGTCACGATGGATGATAATAGGTTCCAGCGAGTGAAGGTAGTGGAGGCCAAGCGCAATG 102792 Query 109664 CGCCGTGC 109671 | ||||| Sbjct 102793 CTGCGTGC 102800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1951934259476440