Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001185145.1_202015-07- 22] 1,605 sequences; 67,656,513 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1090 147 2e-30 seq976 123 2e-23 seq477 122 7e-23 seq151 116 3e-21 seq2 111 1e-19 >seq1090 Length=245726 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 29558 GTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG 29617 |||| || | | ||| || ||||| || || ||||| || || || ||||| || || | Sbjct 31477 GTCCGCCGCGAAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 31418 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 | | ||||||| || || ||||| || || || | ||||||| ||||| || || | Sbjct 31417 CCAGGGTGCGACCGTCCTCCAGTTGCTTACCCGCGAAGATCAATCGCTGCTGGTCGGGAG 31358 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 | |||||||| |||||||| | ||||| || || | || | ||| |||||| || | Sbjct 31357 GGATACCCTCCTTGTCTTGGATCTTTTGCTTCACGTTCTCAATAGTATCAGAAGACTCGA 31298 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | |||||||| || ||||||||||| ||||| ||||| || |||||||| Sbjct 31297 CCTCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTAACGAAGATCTGCAT 31249 Score = 131 bits (144), Expect = 1e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || || ||||| || || || ||||| || || || | |||||| Sbjct 109124 ACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCC 109183 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || ||||| ||| | ||||| | |||||| || || ||||||||||| || Sbjct 109184 ATCTTCGAGCTGCTTGCCGGCAAAGATCAAGCGTTGCTGGTCGGGGGGAATACCCTCCTT 109243 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || ||||| | || | ||||| || || || |||||||| || Sbjct 109244 GTCCTGGATCTTCTGCTTGACGTTCTCGATGGTGTCGGAGCTCTCCACCTCAAGAGTGAT 109303 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || |||||||| | ||| || || || || |||||| Sbjct 109304 GGTCTTGCCAGTGAGGGTCTTCACGAAGATTTGCATT 109340 Score = 122 bits (134), Expect = 7e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || || ||||| || || || ||||| || || || | |||||| Sbjct 123495 ACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCC 123436 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || ||||| ||| | |||| | ||||| || || ||||||||||| || Sbjct 123435 ATCTTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGAATACCCTCCTT 123376 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || ||||| | || | ||||| || || || |||||||| || Sbjct 123375 GTCCTGGATCTTCTGCTTGACGTTCTCGATGGTGTCGGAGCTCTCCACCTCAAGAGTGAT 123316 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || |||||||| | ||| || || || || |||||| Sbjct 123315 GGTCTTGCCAGTGAGGGTCTTCACGAAGATTTGCATT 123279 >seq976 Length=280112 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||||| || || ||||| || || || ||||| || || || | |||||| Sbjct 161339 ACGCAAGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCC 161280 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || ||||| || | ||||| | ||||| || || ||||||||||| || Sbjct 161279 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATACCCTCCTT 161220 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || |||||| |||| | |||||||| ||| || || || || || Sbjct 161219 GTCCTGAATCTTCTGCTTGACATTTTCAATGGTGTCAGAGGATTCCACCTCCAGGGTGAT 161160 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | ||| || || || |||||||| Sbjct 161159 GGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 161124 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||| || || ||||| || || || ||||| || || || | |||||| Sbjct 141741 CGAAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCG 141682 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||| || | ||||| | ||||| || || ||||| ||||| ||| Sbjct 141681 TCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCCTTG 141622 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | ||||||||||| | || | ||||| || || ||||| || || || Sbjct 141621 TCTTGGATCTTTTGTTTGACGTTCTCGATGGTGTCGGAGCTCTCCACTTCCAGGGTGATG 141562 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||||| || || || || || |||||||| Sbjct 141561 GTTTTGCCAGTCAACGTCTTGACGAAGATCTGCAT 141527 >seq477 Length=14742 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616 ||||| || | || ||| || ||||| || || |||||||| ||||| ||||| || || Sbjct 5626 TGTCCGCCACGCAGACGAAGGACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCG 5685 Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676 || | ||||||| || || || || |||||||| | ||||| | |||||||| || Sbjct 5686 GCCAGGGTGCGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGATCGGGG 5745 Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 ||||| || || ||||| || | ||||||||||| | || | || || || || Sbjct 5746 GGAATGCCTTCCTTGTCCTGGATCTTTTGTTTGACGTTCTCGATGGTATCGGAGCTCTCC 5805 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | ||| || || || || || | ||| || || || |||||||| Sbjct 5806 ACCTCCAAAGTGATTGTCTTACCGGTCAGGGTCTTTACGAAGATCTGCAT 5855 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || ||||| || || ||||| || || || ||||| || || || Sbjct 6085 CCACCGCGCAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 6144 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || || ||||| || | ||||| | |||||| || || ||| Sbjct 6145 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGTTGCTGGTCAGGGGGA 6204 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | || || ||||| | || | ||||| || || || Sbjct 6205 ATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCAATGGTGTCCGAGGACTCGACC 6264 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || | ||| || || |||||||| | ||| || || || || |||||| Sbjct 6265 TCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATTTGCATT 6312 >seq151 Length=514231 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||| || ||||| || || ||||| || || || ||||| ||||| || Sbjct 238422 CCACCTCGCAAACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCG 238363 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || ||||| || | || | | ||||| || || ||| Sbjct 238362 AGAGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGA 238303 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | ||||| ||||| | || | |||||||| || || Sbjct 238302 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTCTCGATGGTGTCAGAGCTCTCCACC 238243 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || ||||| |||||||||||||| || || || |||||||| Sbjct 238242 TCCAAGGTAATAGTCTTGCCAGTTAAGGTCTTGACGAAGATCTGCAT 238196 >seq2 Length=914981 Score = 111 bits (122), Expect = 1e-19 Identities = 155/216 (72%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || || || || || || || ||||| || || || | ||||||| Sbjct 65669 ACGGAGGACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACC 65728 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || |||||||| || | |||| | |||||| || || ||||||||||| || Sbjct 65729 GTCCTCCAGCTGTTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGG-GGAATACCCTCCTT 65787 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||||| ||||| | || | ||||| || || || || | || || Sbjct 65788 GTCTTGGATCTTTTGCTTGACGTTCTCGATGGTGTCGGAGCTCTCCACCTCCAAGGTAAT 65847 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| ||||| || || || |||||||| Sbjct 65848 GGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 65883 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || || || || || || || ||||| || || || | ||| ||| Sbjct 65896 ACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGACC 65955 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || ||||| ||| | || | | |||||||| || || || || || || Sbjct 65956 GTCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGATCAGGAGGGATGCCTTCCTT 66015 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | ||||||||||| | || | ||||| || || ||||| || || || Sbjct 66016 GTCCTGGATCTTTTGTTTGACGTTCTCGATGGTGTCGGAGCTCTCCACTTCCAGGGTAAT 66075 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| ||||| || | || || || || |||||||| Sbjct 66076 AGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 66111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385211664751305