Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001185145.1_202015-07- 22] 1,605 sequences; 67,656,513 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq753 143 5e-29 seq151 116 7e-21 seq976 104 5e-17 seq1391 100 6e-16 >seq753 Length=293645 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| ||||| || ||||| ||||| || || ||||| || || || || | Sbjct 49614 CCTCCCCTCAGACGCAACACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCC 49673 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||||| || || || || ||||||||||| || | || ||||| ||||| Sbjct 49674 AAGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCGGGAGGG 49733 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || |||||| || ||||||||||| || ||| | ||| ||| Sbjct 49734 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACATTTTCAATAGTGTCAGAGGATTCCACT 49793 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| || | ||||| || || |||||||| Sbjct 49794 TCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 49840 >seq151 Length=514231 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| |||||| || || ||||| || || || || || || || || ||||||| Sbjct 222441 CCACCTCGCAAACGAAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCG 222500 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||||| || || || || || || ||||| || | || || || || || Sbjct 222501 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGA 222560 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || |||||| || || || ||||| || || | || || Sbjct 222561 ATGCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCAATGGTGTCCGACGACTCGACC 222620 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||| || ||||||||||| || || |||||||| Sbjct 222621 TCAAGAGTGATGGTCTTTCCCGTCAACGTCTTGACGAAGATCTGCAT 222667 Score = 113 bits (124), Expect = 9e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||||| || ||||| || || || || ||||| || || || || | Sbjct 238194 CCTCCGCGGAGACGCAACACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 238135 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||||| || || || || || || ||||| || | ||| || || ||||| Sbjct 238134 AAGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGTTGCTGGTCGGGAGGA 238075 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || |||||| || ||||| || || || || || || || Sbjct 238074 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACATTCTCGATGGTGTCTGAAGACTCGACC 238015 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||| || ||||| || ||||||||||| || || |||||||| Sbjct 238014 TCCAGAGTGATGGTCTTTCCCGTCAACGTCTTGACGAAGATCTGCAT 237968 >seq976 Length=280112 Score = 104 bits (114), Expect = 5e-17 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| ||| ||||||||||| || || || || ||||| || || || || | Sbjct 160894 CCTCCCCTCAGACGAAGAACTAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 160835 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || || || ||||| | | ||| ||||| || || Sbjct 160834 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGATCGGGGGGA 160775 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGT-TCTA 82761 || |||||||| || |||||||| ||| || || || || || || || || | || | Sbjct 160774 ATGCCTTCCTTGTCCTGAATCTTCTGC-TTCACGTTCTCGATGGTGTC-GGAGCTCTCCA 160717 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | |||| || || ||||| || || | ||||| || || || |||||| Sbjct 160716 CCTCCAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCATT 160667 Score = 100 bits (110), Expect = 6e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || ||||| || || || || ||||| || || || || | || | | || Sbjct 161339 ACGCAAGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCC 161280 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || || || ||||| | | || || || || || || || ||||| Sbjct 161279 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATACCCTCCTT 161220 Query 82715 ATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 || |||||||| ||||| ||||||||||| || ||| | ||| || |||| || | Sbjct 161219 GTCCTGAATCTTCTGCTTG-ACATTTTCAATGGTGTCAGAGGATTCCACCTCCAGGGTGA 161161 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| || | ||||| || || |||||||| Sbjct 161160 TGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 161124 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| || || || || ||||| || || || || | | | | ||| Sbjct 141741 CGAAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCG 141682 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| | | || || || || || || || ||||| Sbjct 141681 TCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATGCCCTCCTTG 141622 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 ||||| |||||| ||| || || || || || || || | || ||||||| || || Sbjct 141621 TCTTGGATCTTTTGTTTGACGTTCTCGATGGTGTCGG-AGCTCTCCACTTCCAGGGTGAT 141563 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||||||||| || || |||||||| Sbjct 141562 GGTTTTGCCAGTCAACGTCTTGACGAAGATCTGCAT 141527 >seq1391 Length=76266 Score = 100 bits (110), Expect = 6e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||| || ||||| || ||||| || || || || | | | | || Sbjct 37273 ACGGAGGACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCC 37332 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || || |||||||| | | ||| || || || || || || ||||| Sbjct 37333 GTCCTCCAGCTGCTTGCCGGCAAAGATCAAACGTTGCTGGTCAGGGGGAATGCCCTCCTT 37392 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 |||||| |||||| || || || || || || || || | || || ||||| || | Sbjct 37393 ATCTTGGATCTTTTGCTTGACGTTCTCGATGGTGTC-GGAGCTCTCCACCTCCAAGGTAA 37451 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || ||||| ||||| || || |||||||| Sbjct 37452 TGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 37488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981807009644095