Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001185145.1_202015-07- 22] 1,605 sequences; 67,656,513 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1057 149 9e-31 seq1059 132 7e-26 seq1285 122 1e-22 >seq1057 Length=235048 Score = 149 bits (164), Expect = 9e-31 Identities = 328/481 (68%), Gaps = 8/481 (2%) Strand=Plus/Plus Query 39490 ATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTAC 39549 |||||| || |||||| ||| || |||| ||| | | |||||| || |||| ||| || Sbjct 119671 ATTCATGCCGATGAGTCGAACAGGAAGAGACTCGGAAACAAACTCCTTCTCGACGTCAAC 119730 Query 39550 GGCCTCTGTTATTATC-GATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAA 39608 || || | || ||| || | | | ||| || |||| | | ||| | Sbjct 119731 AGCTTCCGCAATGATCCGACGG-ATGATCTCCTCTGGCGGTTTTTCCCTTAACATACCGA 119789 Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 ||| | || || ||||||||||| | ||| ||||| | || || | ||||| | Sbjct 119790 ACAGCATACAAGCAAAGTCACAATGCATGCCTTCATCCTTGCTTATGAGCTCGTTGCTGA 119849 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCA 39727 | ||||||||||||| || || | || || ||||| || ||||| ||| || || || Sbjct 119850 AGCTGAGTCCAGGCATCAGCCCTCTTTTCTTCAGCCAGAAGATGGC-GCAGAAGGAACCC 119908 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA-CTTGTATC 39786 || |||||||||||||| ||||| ||||| || | || | | | || ||||| | Sbjct 119909 GAGAAGAAGATGCCTTCCACTGCGGCAAAGGCGATGAGCCGCAGAGCAAAAGCTTGTGGC 119968 Query 39787 ATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTAT 39846 || | |||||| | | ||||| || || |||||||| || | ||||| || || || Sbjct 119969 -TTTTCTATCCAACGCAGCGCCCATTCGGCCTTCTTCTTCACGCTAGGCACCGTCTCAAT 120027 Query 39847 AGCATTAAAGAGATAATGTTTTTC-ATCACTATCTTTAACATATGTATCTATTAACAGAC 39905 || |||||||| | | ||||| |||| ||||| || || || || || | ||| Sbjct 120028 GGCGTTAAAGAGCTTAGCCTTTTCTTTCAC-GTCTTTGACGTAGGTGTCGATGAGCAGCG 120086 Query 39906 TATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTT 39965 ||||| || || |||||||| || || || || ||||| ||||| || || | ||| | Sbjct 120087 AGTACATCTCCGAGTGGATGTTCTCCATGGCGATTTGAAAGCCGTAGAAGCAACGTGCCT 120146 Query 39966 C 39966 | Sbjct 120147 C 120147 >seq1059 Length=95284 Score = 132 bits (146), Expect = 7e-26 Identities = 235/343 (69%), Gaps = 0/343 (0%) Strand=Plus/Minus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 ||| | ||| ||| | || || ||| || || || |||||||| |||||| |||| || Sbjct 57108 CTCCTGTTCGTATCGAGTGTAGAGCGCCTCAAACTCCTCTCCCCAGACATCAGCCAAGCC 57049 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 ||| ||| || ||||| | || |||||| | | || || ||||| ||||| || Sbjct 57048 GGGAGCTTCGTTGGGACAAAACAGGGACCACTCCTGATTGCTCTCCACTCGCTTCATGAA 56989 Query 69609 TAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668 ||| || |||| ||| || || |||||| ||||||| | || || || || Sbjct 56988 TAGGTCCGGAACCCAGAGCGCGTAAAAGAGGTCTCTGGCGCGCAGCTCCTCCTTGCCGTG 56929 Query 69669 AttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 69728 || || || || || |||||||| | || || | |||||||| || | || | || Sbjct 56928 GTTCTTCTTCAGCTCCAGAAACTCGAAAACGTCCGCGTGCCATGGCTCCAAGTAGACAGC 56869 Query 69729 CATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGAC 69788 | |||| ||||| |||||| || || | |||||||||||||| ||| |||| Sbjct 56868 AAAAGCTCCTTTGCGTTTGCCTCCTCCTTGGTCGACGTATCTGGCAGTGTCGTTAAAGAC 56809 Query 69789 TCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCA 69831 | |||||||| || | ||| || || | ||||| |||||| Sbjct 56808 GCGAAGCATCGGGATGAGACCGTTCGACGTGCCATTAGTTCCA 56766 >seq1285 Length=126460 Score = 122 bits (134), Expect = 1e-22 Identities = 546/859 (64%), Gaps = 7/859 (1%) Strand=Plus/Plus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||| |||||| ||| || || || ||||| |||||||||| || || |||||||| Sbjct 50932 CATGACTCCCGCTTTGGCATACTCTCCCACGCGCCTCTCGAAAAAGTTGGTCTTGCCTTC 50991 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432 ||| || || ||||| | |||||||| || || || || || | || | | || Sbjct 50992 CAAGGAGATGAGCTCCATCCAGTCAAACGGGTTCGTAGCGTTGTAGATCTTCTCGCAGCC 51051 Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATT 39492 | | | || | || || ||||| || ||||| ||| | || || Sbjct 51052 GAGGGCCACCAGCAGGCGGTCCGCCACAAACTCAATGTACTGGCACATGAGCTCGGCGTT 51111 Query 39493 CATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGC 39552 ||| || ||||| | ||||| || | ||| | | |||||| ||||| || || || || Sbjct 51112 CATGCCGATGAGCCTCACTGGAAGGGACTCGCTCACAAACTCCTTTTCAATCTCCACAGC 51171 Query 39553 CTCTGTTATTATCGATGTTACTACC-TCATCACTCGGTGGATGCAATAA-ATGTTTAAAC 39610 ||| | || ||| || || || | ||| | | | ||||| | Sbjct 51172 CTCAGCAATAATCTTGGTGGGCACAGTCGTTGGAGGGTCTGTTCTGGATCATGTTGTAG- 51230 Query 39611 ATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAAT 39670 | | |||||| ||||| || || | |||||| || || || || |||||| || Sbjct 51231 AGGAGGCAGGCAAAGTCGCAGTGCATGCCCTCGTCCCTGCTGATCTGCTCGTTACTGAAA 51290 Query 39671 GTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAA 39730 ||||||||||| || || | ||| || | |||||| |||||| ||| || ||||| Sbjct 51291 CAAAGTCCAGGCATGAGGCCTCTCTTCTTCAACCAAAAGATGGCACAAAAGGAACCAGAG 51350 Query 39731 AAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTA 39790 || |||||||| || || || ||||| || || || | | | | | || Sbjct 51351 AAAAAGATGCCCTCCACAGCGGCAAAGGCCACGAGCCGGTGAGCAAAGCCGTCGGGGTTT 51410 Query 39791 TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 | ||||||||| ||||| ||||| ||||| || ||||| || || || || Sbjct 51411 TCTATCCACTTGATGGCCCACTCAGCCTTCTTTCGGACGGTAGGCACGGTCTCGATGGCG 51470 Query 39851 TTAAAGAGATAATGTTTTTCATCACT--ATCTTTAACATATGTATCTATTAACAGACTAT 39908 || ||||| || ||| || | || || || || || || || | || | Sbjct 51471 TTGAAGAG--GCGGTCCTTCTCCAATGGGTCCTTCACGTAGGTGTCGATCAGAAGGGAGT 51528 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 |||| || || ||||| || ||||| || |||||||| ||||| || || | || || | Sbjct 51529 ACATCTCCGAGTGGATATTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCGG 51588 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | ||| ||||| || | | ||||| || ||| || || || || | Sbjct 51589 GGACTTGCACCTCCTTCATGAAGCGGACGGCCAAGTTCTCAACAACGATGCCGTCCGAGG 51648 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCC 40088 ||||||| || |||| || || | |||||||| || || | | ||| |||| Sbjct 51649 CGGCAAAGAAGGCCAGGACGTGGGTGATAAAATAGCGCTCGTCCTCAGAGAGTTTCTTCC 51708 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 |||| ||| ||||| | | || || || || || ||||| || ||||| |||| Sbjct 51709 AGTCGGTGAGATCTTGGGCAAGGTCCACCTCCTCGGCGGTCCAGAAGCTGGCCTCGGCCT 51768 Query 40149 TTTTGTACATGTTCCATAT 40167 | |||||||| | ||| || Sbjct 51769 TCTTGTACATCTCCCAGAT 51787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686895018892200