Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001185145.1_202015-07- 22] 1,605 sequences; 67,656,513 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1059 196 6e-45 seq1285 156 5e-33 seq1539 145 9e-30 >seq1059 Length=95284 Score = 196 bits (216), Expect = 6e-45 Identities = 625/961 (65%), Gaps = 19/961 (2%) Strand=Plus/Minus Query 118695 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 118754 ||| |||| ||||| |||| || || || || ||||||| || ||||| ||| Sbjct 57341 ACAAACTTGGGAAGAGCGAGAGAAGCGAGGTTGCACACAGCCACTTCGTCCTTGGAGGTG 57282 Query 118755 TACTCTATAATTTCCGTGCACAAGTT---TGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 ||||| || || |||||||| | ||| ||||| ||||||||| | ||||| ||| Sbjct 57281 TACTCCATGATCTCCGTGCAAAGGTTGCTTGAACG---AATGGTGCCGAGGTTCTGTTGG 57225 Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 || ||||| ||| |||| |||||||| |||||||| ||||| || ||||| | | | Sbjct 57224 TTGGACTTGCGGTTGCACGAGTCCTTGTATAGCATGTAGGGCGTGCCGGTCTCTATCTCG 57165 Query 118872 GACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCT 118931 || || || || ||||| || || || | ||||||| ||||| Sbjct 57164 CTCTCCAGGATGGCGAACCAGAGCTCTTGGGCCTTAACGCTCCTCCTGGCTCGGCCCTCC 57105 Query 118932 TCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGT 118991 | ||||| |||||||| || |||||||| || ||| | | || | | || || Sbjct 57104 TGTTCGTATCGAGTGTAGAGCGCCTCAAACTCCTCTCCCCAGACATCAGCCAAGCCGGGA 57045 Query 118992 GCCTTATCTGGGCAGAAGAGAGACCATT---GACCACCCTCCTCAACCCGCTTCATGAAG 119048 || | | || || || || ||||| | || | |||| || ||||||||||| Sbjct 57044 GCTTCGTTGGGACAAAACAGGGACCACTCCTGATTGCTCTCC---ACTCGCTTCATGAAT 56988 Query 119049 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCG-AGCTTCTTCATCCCCCTG 119107 ||||| || | ||||||||| | ||||| || | ||| ||| || || | || || Sbjct 56987 AGGTCCGGAACCCAGAGCGCGTAAAAGAGGTCTCTGGCGCGCAGC-TCCTCCTTGCCGTG 56929 Query 119108 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 119167 || || ||||| ||| || | | ||||||||||| || |||| ||| || || Sbjct 56928 GTTCTTCTTCAGCTCCAGAAACTCGAAAACGTCCGCGTGCCATGGCTCCAAGTAGACAGC 56869 Query 119168 GATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATAC 119224 | | || || || | || | |||| || || || |||||| ||||||| || Sbjct 56868 AAAAGCTCCTTTGCGTTTGCCTCCTCCTTGGTCGACGTATCTGGCAGTGTCGTTAAAGAC 56809 Query 119225 ACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATT 119284 |||||||| || |||| ||| | || |||||| || || || || | Sbjct 56808 GCGAAGCATCGGGATGAGACCGTTCGACGTGCCATTAGTTCCACGGATGTAGCTGTGCGA 56749 Query 119285 GGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA 119344 ||| | || ||| | | | || || || || || ||| ||||| ||||| Sbjct 56748 GGCACGGATTGTGTGTACGCTGAGGCCGATGCCACCAGCGGCCTTGGAGATCAAGGCGCA 56689 Query 119345 CTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCA 119404 | | | || || ||||||| || ||||| ||| || | | | || | ||||| Sbjct 56688 TTGCTTTAGGGTGTCGTAGATGCCCTCGATGCTGTCCTCCCTCATCGTGAGCAAAAAGCA 56629 Query 119405 GCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA 119464 | || | ||| |||| ||| || |||||||||||||| || || ||||| | || Sbjct 56628 GGAAGAGAGTTGCGGCCGCTCTGTGCCGGCGTTGAAGAGAGTGGGGGTGGCGTGAGTAAA 56569 Query 119465 -CATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAA 119523 | | || |||||| | ||||||||| | | | || | ||||||| || || | Sbjct 56568 GTAGAGGTT-GGACATGAGATTGTAGGTCTCAATGGCAGCAGCAATGTCTCCCATATGGA 56510 Query 119524 TACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCC 119583 | ||||| | || ||||| | ||||| ||| || | || | | | || || | | Sbjct 56509 TGCCGATGGCAACTCGCATGATCATGTGTTGAGGCCTCTCAACGATCTTGCCCTCCACCT 56450 Query 119584 TCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAATCGTAGTCCCGCT 119643 | |||||| ||| ||||||||||||| | ||||| || ||| |||||| || | Sbjct 56449 TGAAGAGGTAGCTCCTCTCCAAGGTCTTAAAGCCAAAGTAAGAGTAATTGTAGTCTCGGT 56390 Query 119644 T 119644 | Sbjct 56389 T 56389 Score = 98.7 bits (108), Expect = 1e-15 Identities = 325/494 (66%), Gaps = 16/494 (3%) Strand=Plus/Minus Query 117839 GAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAA 117898 |||||||||||| ||||| || | |||| |||||| || || | ||||| |||| | Sbjct 58215 GAGGTAGTACATTCCCGTTTTCAAGCCCTTCTTCCAAGCGTAAAAGTGCATCGAGGTGAG 58156 Query 117899 CTTGG-AGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGC 117957 ||||| | ||| || | || ||| | ||| | || ||| |||||||| || | Sbjct 58155 CTTGGCAAAGGAGGGGGCCTTG-ATGTGCACGTTGAAGCTCTGGCTCTGATCGATAAA-C 58098 Query 117958 GTCCC-CGATCCGCCGCCATATCAATCACATCCTTCATCTTGATT--TCCCACACAGTCC 118014 | ||| |||||||||||||| || |||| | | | || |||||||| ||| Sbjct 58097 GCCCCTCGATCCGCCGCCATGTCGATCAAGG--TACGTTGGGACACCTCCCACACGGTCT 58040 Query 118015 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCC---G 118071 |||| || |||||||| | || ||||| | | | ||| | || || | Sbjct 58039 TGTACAGCTTCTTAATGTGTTCCGGGATGCAGGCAAGGTGTTGAACAGAGCCGTTGTGAG 57980 Query 118072 CCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCA 118131 || |||| | | ||||| || ||| || || | ||| | || || | || Sbjct 57979 CC---ACCAGTTGGTTCTTCAGCTCGGCGCTCCACAGGCCTAAGTTTCTCAGGTCTTGCA 57923 Query 118132 CGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTG 118190 | || | ||||||| || || || || | | |||| | ||| ||||| ||| Sbjct 57922 TCAAGTGGCTGTTGACAATGGTGAAGTCTCCAGCCAAGATGCGGCG-AGAGTAGATGTTG 57864 Query 118191 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 118250 | ||||| |||||||||||||||||||| || | ||| || | ||||||||||| ||| Sbjct 57863 GAAGTGTAGGGCTCAAAGCACTCATTGTTGCCGAGGATCTGCGAGGTGGAGGCTGTAGGC 57804 Query 118251 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCG 118310 ||||| |||| | | |||||| | || || | ||| | || | ||| || || Sbjct 57803 ATGGGAGCCACCAACAAGCTGTTCCTCAGGCCGTGCTCCTTGATCTTCTGCTTCAGGCCG 57744 Query 118311 TCCCAGTCGTAGTT 118324 ||||||| |||| Sbjct 57743 GCCCAGTCCCAGTT 57730 >seq1285 Length=126460 Score = 156 bits (172), Expect = 5e-33 Identities = 557/857 (65%), Gaps = 28/857 (3%) Strand=Plus/Plus Query 129722 TTGCCATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTC 129781 ||| |||| || || || ||| ||||||| ||||| ||||| || |||||| ||| | Sbjct 50945 TTGGCATACTCTCCCACGCGCCTCTCGAAAAAGTTGGTCTTGCCTTCCAAGGAGATGAGC 51004 Query 129782 TCCATAAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAG 129840 ||||| | ||||| |||||| | | ||| | || | || ||| || | || Sbjct 51005 TCCATCCAGTCAAACGGGTTCGTAGCGTTGTAGATCTTCTCGCAG-CCGAGGGCCACCAG 51063 Query 129841 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG 129900 || || |||| || |||||||||||| |||| ||||| |||||| |||||||| Sbjct 51064 CAGGCGGTCCGCCACAAACTCAATGTACTGGCACATGAGCTCGGCGTTCATGCCGATGAG 51123 Query 129901 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGA- 129959 | ||| || | || | ||| |||| ||||| |||||||| || ||| | Sbjct 51124 CCTCACTGGAAGGGACTCGCTCACAAACTCCTTTTCAATCTCCACAGCCTCA-GCAATAA 51182 Query 129960 ---TGGCGTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGG 130016 ||| | | | ||| || ||||| || | | | ||| |||| || Sbjct 51183 TCTTGGTGGGCACAGTCGT--TGGAGGGTCTGTTCTGGATCATGTTGTAGAGGAGGCAGG 51240 Query 130017 CAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 130076 |||| || ||| | |||||||| | | ||| | || || ||| || || || | Sbjct 51241 CAAAGTCGCAGTGCATGCCCTCGTCCCTGCTGATCTGCTCGTTACTGAAACAAAGTCCAG 51300 Query 130077 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 130136 ||||||| || | |||||||||||| || || |||||||| || |||||||| ||||| | Sbjct 51301 GCATGAGGCCTCTCTTCTTCAACCAAAAGATGGCACAAAAGGAACCAGAGAAAAAGATGC 51360 Query 130137 CCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG-CGGGACTTTGTATCAAAC 130195 |||||||| || || || | ||| || | ||||||| | |||| ||| ||| | Sbjct 51361 CCTCCACAGCGGCAAAGGCCACGAGCCGGTGAGCAAAGCCGTCGGGGTTTTCTAT----C 51416 Query 130196 CACTTCATCGCCCACTGCGCCTT-TTTC--TCGATACACGGGACGGTCTGGATCGCTTCA 130252 ||||| || ||||||| ||||| |||| || || || ||||||| ||| || | Sbjct 51417 CACTTGATGGCCCACTCAGCCTTCTTTCGGACGGTA---GGCACGGTCTCGATGGCGTTG 51473 Query 130253 AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTT 130312 ||||| | ||| || |||| || || | ||| | || || || || || | Sbjct 51474 AAGAGGCGGTCCTTCTCCAATGGGTCCTTCACGTAGGTGTCGATCAGAAGGGAGTACATC 51533 Query 130313 TCGCCATGGACCATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTA 130370 || |||| | ||| ||||| |||| | ||||||| |||| || ||| | Sbjct 51534 TCCGAGTGGATATTCTCA--ATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCGGGGA 51591 Query 130371 TCTGTACCTCATCTGCA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCC 130428 || ||||| || || || | | ||||||| ||| || || || || | Sbjct 51592 CTTGCACCTC--CTTCATGAAGCGGACGGCCAAGTTCTCAACAACGATGCCGTCCGAGGC 51649 Query 130429 AGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCA 130488 ||||| || ||||||| | | || || | | || | ||| || ||||||| Sbjct 51650 GGCAAAGAAGGCCAGGACGTGGGTGATAAAATAGCGCTCGTCCTCAGAGAGTTTCTTCCA 51709 Query 130489 GTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTT 130548 |||| ||||| | | || || |||||||| || ||||| ||| | ||||| Sbjct 51710 GTCGGTGAGATCTTGGGCAAGGTCCACCTCCTCGGCGGTCCAGAAGCTGGCCTCGGCCTT 51769 Query 130549 CTTATAGAGTTCCCAGA 130565 ||| || | ||||||| Sbjct 51770 CTTGTACATCTCCCAGA 51786 >seq1539 Length=27205 Score = 145 bits (160), Expect = 9e-30 Identities = 366/544 (67%), Gaps = 23/544 (4%) Strand=Plus/Minus Query 129722 TTGCCATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTC 129781 ||| |||| || || || ||| ||||||| ||||| ||||| || |||||| || | | Sbjct 26543 TTGGCATACTCTCCCACGCGCCTCTCGAAAAAGTTGGTCTTGCCTTCCAAGG-GAGAG-C 26486 Query 129782 TCCATAAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAG 129840 ||||| | ||||| |||||| | | ||| | || | || ||| || | || Sbjct 26485 TCCATCCAGTCAAACGGGTTCGTAGCGTTGTAGATCTTCTCGCAG-CCGAGGGCCACCAG 26427 Query 129841 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG 129900 || || |||| || |||||||||||| |||| ||||| |||||| |||||||| Sbjct 26426 CAGGCGGTCCGCCACAAACTCAATGTACTGGCACATGAGCTCGGCGTTCATGCCGATGAG 26367 Query 129901 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGAT 129960 | ||| || | || | ||| |||||||||| ||||| ||||| | ||| Sbjct 26366 CCTCACTGGAAGGGACTCGCTCACAAACTCCTTCTCAATCTCCACGGCTTCAGCAATGAT 26307 Query 129961 ---GGCGTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGC 130017 || | | ||| || || ||||| || | | | ||| |||| ||| Sbjct 26306 CTTGGTGGGCATG---TCGTTGGAGGGTCTGTTCTGGATCATGTTGTAGAGGAGGCAGGC 26250 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 ||| || ||| | |||||||| | | ||| | ||||| ||| || || || || Sbjct 26249 AAAGTCACAGTGCATGCCCTCGTCCCTGCTGATCTGCTCATTACTGAAACAAAGTCCAGG 26190 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 ||| || || | |||||||||||| || || |||||||| || |||||||| ||||| || Sbjct 26189 CATAAGGCCTCTCTTCTTCAACCAAAAGATGGCACAAAAGGAACCAGAGAAAAAGATGCC 26130 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG-CGGGACTTTGTATCAAACC 130196 ||||| ||||| || | ||| || | ||||||| | |||| ||| ||| || Sbjct 26129 --CCACAGCAGCGAAGGCCACGAGCCGGTGAGCAAAGCCGTCGGGGTTTTCTAT----CC 26076 Query 130197 ACTTCATCGCCCACTGCGCCTT-TTTC--TCGATACACGGGACGGTCTGGATCGCTTCAA 130253 |||| || ||||||| || || |||| || || || ||||||| ||| || | | Sbjct 26075 ACTTGATGGCCCACTCAGCTTTCTTTCGGACGGTA---GGCACGGTCTCGATGGCGTTGA 26019 Query 130254 AGAG 130257 |||| Sbjct 26018 AGAG 26015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618422792643800