Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001185145.1_202015-07- 22] 1,605 sequences; 67,656,513 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1059 167 3e-36 seq1285 109 6e-19 seq1057 104 3e-17 seq1539 87.8 2e-12 >seq1059 Length=95284 Score = 167 bits (184), Expect = 3e-36 Identities = 628/975 (64%), Gaps = 19/975 (2%) Strand=Plus/Plus Query 104139 GAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACG 104196 |||||||| | | ||| ||||| | || ||| | |||| |||||| ||||||| | Sbjct 56393 GAGACTACAATTACTCTTACTTTGGCTTTAAGACCTTGGAGAGGAGCTACCTCTTCAAGG 56452 Query 104197 GCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 | || || | | || | || || ||||| ||||||| || |||||||| || Sbjct 56453 --TGGAGGGCAAGATCGTTGAGAGGCCTCAACACATGATCATGCGAGTTGCCATCGGCAT 56510 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATG-T 104315 ||| || |||||||| | ||| | | ||||| ||| | |||||| || | | | Sbjct 56511 CCATATGGGAGACATTGCTGCTGCCATTGAGACCTACAATCTCATGTCC-AACCTCTACT 56569 Query 104316 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTT 104375 | | |||||| || || || |||||||| || || ||| | || ||| | || | Sbjct 56570 TTACTCACGCCACCCCCACTCTCTTCAACGCCGGCACAGAGCGGCCGCAACTCTCTTCCT 56629 Query 104376 GCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGT 104435 |||| | || | | | ||||||| ||| | || ||||| | || || | | | | Sbjct 56630 GCTTTTTGCTCACGATGAGGGAGGACAGCATCGAGGGCATCTACGACACCCTAAAGCAAT 56689 Query 104436 GTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCA 104495 | || ||||| ||| ||||| || || || | | | || | | ||| Sbjct 56690 GCGCCTTGATCTCCAAGGCCGCTGGTGGCATCGGCCTCAGCGTACACACAATCCGTGCCT 56749 Query 104496 ATAA-ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 104554 | | || || || || || ||||| || | ||| | || || ||||||||| Sbjct 56750 CGCACAGCTAC-ATCCGTGGAACTAATGGCACGTCGAACGGTCTCATCCCGATGCTTCGC 56808 Query 104555 GTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATC 104611 || ||||||| ||| || | || || | |||| || | || || ||| || | Sbjct 56809 GTCTTTAACGACACTGCCAGATACGTCGACCAAGGAGGAGGCAAACGCAAAGGAGCTTTT 56868 Query 104612 GCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAAC 104671 || ||||| | ||||||||||||||||| | | ||||| || ||| || ||| Sbjct 56869 GCTGTCTACTTGGAGCCATGGCACGCGGACGTTTTCGAGTTTCTGGAGCTGAAGAAGAAC 56928 Query 104672 CAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTC 104731 || || | |||||| ||| | | || ||||| | ||| |||||| |||| || || Sbjct 56929 CACGGCAAGGAGGAGCTGCGCGCCAGAGACCTCTTTTACGCGCTCTGGGTTCCGGACCTA 56988 Query 104732 TTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCT 104791 ||||||||| |||| ||| | | | ||||| || |||||||| || | || || Sbjct 56989 TTCATGAAGCGAGTGGAGAGCAATCAGGAGTGGTCCCTGTTTTGTCCCAACGAAGCTCCC 57048 Query 104792 GGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAA 104851 || | | |||| | ||| ||||||||||| || || ||||| ||||| | || Sbjct 57049 GGCTTGGCTGATGTCTGGGGAGAGGAGTTTGAGGCGCTCTACACTCGATACGAACAGGAG 57108 Query 104852 GGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAA 104911 || || || | || || || || | ||| || || || || | Sbjct 57109 GGCCGAGCCAGGAGGAGCGTTAAGGCCCAAGAGCTCTGGTTCGCCATCCTGGAGAGCGAG 57168 Query 104912 ACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAA 104971 | ||||| || || || |||||||| ||||| ||| | || |||| ||| || ||| Sbjct 57169 ATAGAGACCGGCACGCCCTACATGCTATACAAGGACTCGTGCAACCGCAAGTCCAACCAA 57228 Query 104972 AAGAATTTGGGTGTGATCAAGAGTTC---CAATCTCTGTACAGAAATCTTGGAATTTACA 105028 |||| | || | || |||| ||| || || || || ||| |||| | || Sbjct 57229 CAGAACCTCGG---CACCATTCGTTCAAGCAACCTTTGCACGGAGATCATGGAGTACACC 57285 Query 105029 GACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGAT 105088 ||| || || ||||||||| |||||||| || ||||||| ||||||| |||| | Sbjct 57286 TCCAAGGACGAAGTGGCTGTGTGCAACCTCGCTTCTCTCGCTCTTCCCAAGTTTGTG--T 57343 Query 105089 CCAGAGACAAAGACA 105103 ||| ||| ||||| Sbjct 57344 CCATCGACGCAGACA 57358 Score = 95.1 bits (104), Expect = 1e-14 Identities = 302/463 (65%), Gaps = 14/463 (3%) Strand=Plus/Plus Query 105485 ATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACC 105544 ||||||||| | || || | ||||| | | ||||||| ||||| |||||||||||| Sbjct 57760 ATCAAGGAGCACGGCCTGAGGAACAGCTTGTTGGTGGCTCCCATGCCTACAGCCTCCACC 57819 Query 105545 GCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA-TCTGAG 105603 | || ||| | || || ||||| |||||||| |||||||| | |||||||| ||| | Sbjct 57820 TCGCAGATCCTCGGCAACAATGAGTGCTTTGAGCCCTACACTTCCAACATCTACTCT-CG 57878 Query 105604 AAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGA 105663 | | | | || ||||| || |||||||||| || | || | ||||| | | | Sbjct 57879 CCGCATCTTGGCTGGAGACTTCACCATTGTCAACAGCCACTTGATGCAAGACCTGAGAAA 57938 Query 105664 GATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTG----AAAGCGGGTGGTTCCA 105719 | || || ||| | || ||||| | | ||||| | | | || || Sbjct 57939 CTTAGGCCTGTGGAGCGCCGAGCTGAAGAACCAACTGGTGGCTCACAAC----GGCTCTG 57994 Query 105720 TTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGA-- 105777 ||||| | ||| || || | | ||||||||| ||||| || || ||||| Sbjct 57995 TTCAACACCTTGCCTGCATCCCGGAACACATTAAGAAGCTGTACAAGACCGTGTGGGAGG 58054 Query 105778 AATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAG 105837 || | | | || || |||||||| || ||||| || || || ||||| || Sbjct 58055 TGTCCCAACGTACCTTG--ATCGACATGGCGGCGGATCGAGGGGCGTTTATCGATCAGAG 58112 Query 105838 TCAAAGTATGAATCTCTTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACAT 105897 || || | || | ||| | || | | |||||||| | || |||||| | Sbjct 58113 CCAGAGCTTCAACGTGCACATCAAGGCCCCCTCCTTTGCCAAGCTCACCTCGATGCACTT 58172 Query 105898 GTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTC 105940 ||| |||||||||||| | |||||||| ||||| |||||| Sbjct 58173 TTACGCTTGGAAGAAGGGCTTGAAAACGGGAATGTACTACCTC 58215 >seq1285 Length=126460 Score = 109 bits (120), Expect = 6e-19 Identities = 178/255 (70%), Gaps = 5/255 (2%) Strand=Plus/Minus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 |||||| | | ||||| | |||||| | || || || | | |||||| || || Sbjct 51490 GAGAAGGACCGCCTCTTCAACGCCATCGAGACCGTGCCTACCGTCCGAAAGAAGGCTGAG 51431 Query 94762 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTC-CTTTGCTGAGCGACTCTTCGCATT 94820 ||||| || |||||| ||| ||| | || ||||||| | || ||| | || || Sbjct 51430 TGGGCCATCAAGTGG----ATAGAAAACCCCGACGGCTTTGCTCACCGGCTCGTGGCCTT 51375 Query 94821 TGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAA 94880 ||| ||| ||||| ||||| |||||||||||||| || || || | |||| | ||||| Sbjct 51374 TGCCGCTGTGGAGGGCATCTTTTTCTCTGGTTCCTTTTGTGCCATCTTTTGGTTGAAGAA 51315 Query 94881 GCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACT 94940 | |||| |||||||| || || || ||| ||||||| ||| | |||||||| | Sbjct 51314 GAGAGGCCTCATGCCTGGACTTTGTTTCAGTAACGAGCAGATCAGCAGGGACGAGGGCAT 51255 Query 94941 CCACCAAGAGTTTGC 94955 ||| || ||||| Sbjct 51254 GCACTGCGACTTTGC 51240 >seq1057 Length=235048 Score = 104 bits (114), Expect = 3e-17 Identities = 150/211 (71%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 94712 AGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGA 94771 |||||||| | ||||| | || || || | | | ||||| || || ||||| || Sbjct 120041 AGCTCTTTAACGCCATTGAGACGGTGCCTAGCGTGAAGAAGAAGGCCGAATGGGCGCTGC 119982 Query 94772 AGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTG 94831 ||| | || |||| | | | |||||| ||| ||| |||| ||||| || | Sbjct 119981 GTTGGATAGA---AAAGCCACAAGCTTTTGCTCTGCGGCTCATCGCCTTTGCCGCAGTGG 119925 Query 94832 AGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCA 94891 | || ||||||||||| |||||||||||||| || | ||||| ||||| |||| || | Sbjct 119924 AAGGCATCTTCTTCTCGGGTTCCTTCTGCGCCATCTTCTGGCTGAAGAAAAGAGGGCTGA 119865 Query 94892 TGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 |||| || ||| ||||| ||||||||| || Sbjct 119864 TGCCTGGACTCAGCTTCAGCAACGAGCTCAT 119834 >seq1539 Length=27205 Score = 87.8 bits (96), Expect = 2e-12 Identities = 174/255 (68%), Gaps = 7/255 (3%) Strand=Plus/Plus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 |||||| | | ||||| | |||||| | || || || | | ||||||||| || Sbjct 26003 GAGAAGGACCGCCTCTTCAACGCCATCGAGACCGTGCCTACCGTCCGAAAGAAAGCTGAG 26062 Query 94762 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTC-CTTTGCTGAGCGACTCTTCGCATT 94820 ||||| || |||||| ||| ||| | || ||||||| | || ||| | || || Sbjct 26063 TGGGCCATCAAGTGG----ATAGAAAACCCCGACGGCTTTGCTCACCGGCTCGTGGCCTT 26118 Query 94821 TGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAA 94880 || ||| | || ||||| |||||||||||||| || || || | |||| | ||||| Sbjct 26119 CGCTGCTGTGG--GGCATCTTTTTCTCTGGTTCCTTTTGTGCCATCTTTTGGTTGAAGAA 26176 Query 94881 GCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACT 94940 | |||| || ||||| || || || ||| || |||| ||| | |||||||| | Sbjct 26177 GAGAGGCCTTATGCCTGGACTTTGTTTCAGTAATGAGCAGATCAGCAGGGACGAGGGCAT 26236 Query 94941 CCACCAAGAGTTTGC 94955 ||| || ||||| Sbjct 26237 GCACTGTGACTTTGC 26251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583249098330200