Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001185145.1_202015-07- 22] 1,605 sequences; 67,656,513 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1057 129 8e-25 seq1285 105 9e-18 >seq1057 Length=235048 Score = 129 bits (142), Expect = 8e-25 Identities = 302/453 (67%), Gaps = 2/453 (0%) Strand=Plus/Plus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| | ||| ||||| |||||||| | |||||||| | || || | ||||| Sbjct 119789 AACAGCATACAAGCAAAGTCACAATGCATGCCTTCATCCTTGCTTATGAGCTCGTTGCTG 119848 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || |||| || ||||| || || | ||| || ||||| || || || ||| || || Sbjct 119849 AAGCTGAGTCCAGGCATCAGCCCTCTTTTCTTCAGCCAGAAGATGGCGCAGAAGGAACCC 119908 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA-CTGGCTTC 48310 || ||||| |||||||| || || ||||| ||| | || | | | || || | | Sbjct 119909 GAGAAGAAGATGCCTTCCACTGCGGCAAAGGCGATGAGCCGCAGAGCAAAAGCTTGTGGC 119968 Query 48311 GTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTAT 48370 || | |||||| || | ||||| || ||||||||||| || | ||||| || || || Sbjct 119969 TTT-TCTATCCAACGCAGCGCCCATTCGGCCTTCTTCTTCACGCTAGGCACCGTCTCAAT 120027 Query 48371 AGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACT 48430 || |||||||| ||||| || ||||| ||||| || || || | || Sbjct 120028 GGCGTTAAAGAGCTTAGCCTTTTCTTTCACGTCTTTGACGTAGGTGTCGATGAGCAGCGA 120087 Query 48431 ATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTC 48490 ||||| || ||||| || || || || || || ||||| ||||| || || | || || Sbjct 120088 GTACATCTCCGAGTGGATGTTCTCCATGGCGATTTGAAAGCCGTAGAAGCAACGTGCCTC 120147 Query 48491 TGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACT 48550 | | || || ||| | || || |||| | ||||| || || ||||| Sbjct 120148 CGGCAGTTGAACTTCCTTCATGAAGCGGGCAGCAAGGTTCTCCACCACGATGCCATCCGA 120207 Query 48551 AGCAGCAAAAAATGCTAATACATGTTTAATAAA 48583 ||||| ||||| || || || || || ||||| Sbjct 120208 GGCAGCGAAAAAGGCCAACACGTGCTTGATAAA 120240 >seq1285 Length=126460 Score = 105 bits (116), Expect = 9e-18 Identities = 324/496 (65%), Gaps = 4/496 (1%) Strand=Plus/Plus Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 || || ||||| || || | || || | |||||| || || || || ||||| || Sbjct 51294 AGTCCAGGCATGAGGCCTCTCTTCTTCAACCAAAAGATGGCACAAAAGGAACCAGAGAAA 51353 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT 48317 || ||||| || || || ||||| || || | | | | | | | ||| | | Sbjct 51354 AAGATGCCCTCCACAGCGGCAAAGGCCACGAGCCGGTGAGCAAAGCCGTCGGGGTTTTCT 51413 Query 48318 ATCCACC-GTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 |||||| | || ||||| ||||||||||| || ||||| || || || || || Sbjct 51414 ATCCACTTGATG-GCCCACTCAGCCTTCTTTCGGACGGTAGGCACGGTCTCGATGGCGTT 51472 Query 48377 AAAGAGAAAGt-ttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 ||||| || || | || || || || ||||| || || || | ||| |||| Sbjct 51473 GAAGAGGCGGTCCTTCTCCAATG-GGTCCTTCACGTAGGTGTCGATCAGAAGGGAGTACA 51531 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495 | || ||||| ||||| ||||| || |||||||| ||||| || || | || || | || Sbjct 51532 TCTCCGAGTGGATATTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCGGGGA 51591 Query 48496 TCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 || |||||| | || || | ||||| |||||| || || || || || | Sbjct 51592 CTTGCACCTCCTTCATGAAGCGGACGGCCAAGTTCTCAACAACGATGCCGTCCGAGGCGG 51651 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGT 48615 |||| || || | || || | |||||||| |||| || ||||| ||||||| Sbjct 51652 CAAAGAAGGCCAGGACGTGGGTGATAAAATAGCGCTCGTCCTCAGAGAGTTTCTTCCAGT 51711 Query 48616 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675 | ||| ||||| | | || || || || || ||||| || ||||| || || | Sbjct 51712 CGGTGAGATCTTGGGCAAGGTCCACCTCCTCGGCGGTCCAGAAGCTGGCCTCGGCCTTCT 51771 Query 48676 TATACATATTCCATAT 48691 | ||||| | ||| || Sbjct 51772 TGTACATCTCCCAGAT 51787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694654863207200