Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3 158 2e-33 seq182 141 1e-28 >seq3 Length=147229 Score = 158 bits (174), Expect = 2e-33 Identities = 440/673 (65%), Gaps = 4/673 (1%) Strand=Plus/Plus Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 || ||||| |||||||| |||| |||| || ||| ||| | ||||| | || ||| Sbjct 143720 TCAAACTCCTCTCCCCAGACATCAGCCAAGCCGGGAGCTTCGTTGGGACAAAACAGGGAC 143779 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 66101 ||||| | || |||||| ||||| || || || |||| ||| || || ||| Sbjct 143780 CACTCCTGATTGCTCTCCACTCGCTTCATGAATAGGTCCGGAACCCAGAGCGCGTAAAAG 143839 Query 66102 AAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 66161 | ||||||| | | ||||| || || ||||| || || || || ||| | | | Sbjct 143840 AGGTCTCTGGCGCGCAGCTCCTCCTTGCCGTGGTTCTTCTTCAGCTCCAGAAACTCGAAA 143899 Query 66162 ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 66221 | || ||||| || |||||||| | || | | |||| |||||| |||||| Sbjct 143900 ACGTCCGCGTGCCATGGCTCCAAGTAGACAGCAAAAGCTCCTTTGCGTTTGCCTCCTCCT 143959 Query 66222 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 66281 || || | |||||| || |||| ||| | || | | ||| || || | ||| || || Sbjct 143960 TGGTCGACGTATCTGGCAGTGTCGTTAAAGACGCGAAGCATCGGGATGAGACCGTTCGAC 144019 Query 66282 GTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCT 66341 || ||||| || || ||| ||||| ||||| || | | || || Sbjct 144020 GTGCCATTAGTTCCACGGATGTAGCTGTGCGAGGCACGGATTGTGTGTACGCTGAGGCCG 144079 Query 66342 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 66401 || || || || || ||||| || |||||| | |||| || || ||||||||||| Sbjct 144080 ATGCCACCAGCGGCCTTGGAGATCAAGGCGCATTGCTTTAGGGTGTCGTAGATGCCCTCG 144139 Query 66402 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 66461 || || || ||| |||| | || | ||| ||| ||| | ||| | || || || Sbjct 144140 ATGCTGTCCTCCCTCATCGTGAGCAAAAAGCAGGAAGAGAGTTGCGGCCGCTCTGTGCCG 144199 Query 66462 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 66521 || || || | || || | ||||| ||||| | | || | |||||||| ||| Sbjct 144200 GCGTTGAAGAGAGTGGGGGTGGCGTGAGTAAAGTAGAGGTTGGACATGAGATTGTAGGTC 144259 Query 66522 TCAATAGCTGAGTCTATATC--CCATTGATGAATTCCTACTGCGACACGCATTAACATGT 66579 ||||| || | | || || |||| ||| || || | || || ||||| | ||||| Sbjct 144260 TCAATGGCAGCAGCAATGTCTCCCAT--ATGGATGCCGATGGCAACTCGCATGATCATGT 144317 Query 66580 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 66639 | ||||| || |||||||||||| | | || || | |||| | ||||| || | Sbjct 144318 GTTGAGGCCTCTCAACGATCTTGCCCTCCACCTTGAAGAGGTAGCTCCTCTCCAAGGTCT 144377 Query 66640 TAAAACCAAAATA 66652 |||| ||||| || Sbjct 144378 TAAAGCCAAAGTA 144390 >seq182 Length=84632 Score = 141 bits (156), Expect = 1e-28 Identities = 307/455 (67%), Gaps = 6/455 (1%) Strand=Plus/Minus Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 |||| || ||| || || || || || | || || || || || || | |||||| Sbjct 22319 AACAGCATACAAGCAAAGTCACAATGCATGCCTTCATCCCTGCTTATGAGCTCGTTGCTG 22260 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCC 36267 || |||| || ||||| || || | || || ||||| || |||| |||| || || || Sbjct 22259 AAGCTGAGCCCAGGCATCAGCCCTCTTTTCTTCAGCCAGAAGATGG-CGCAGAAGGAGCC 22201 Query 36268 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACC--GGCA 36325 || ||||| || ||||| ||||| ||||||||||| || | | || || | | Sbjct 22200 CGAGAAGAAGATGCCTTCCACTGCGGCAAAGGCAATGAGCCGCAGAGCAAAAGCTTGTGG 22141 Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 || | | |||||| | ||||| ||||||||||| || || | ||||| ||||| Sbjct 22140 CTTT--TCTATCCAACGCAGCGCCCATTCGGCCTTCTTCTTCACGCTAGGCACCGTCTCA 22083 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 || || |||||||| | ||||| || ||||| || || || || || | || Sbjct 22082 ATGGCGTTAAAGAGCTTAGCCTTTTCTTTCACGTCTTTGACGTAGGTGTCGATGAGCAGC 22023 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 ||||| ||||| || ||||| || ||||| |||||||| |||||||| || | ||| Sbjct 22022 GAGTACATCTCCGAGTGGATGTTCTCCATGGCGATTTGAAAGCCGTAGAAGCAACGTGCC 21963 Query 36506 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 36565 || | | || ||||| | || || | || | || || ||| || || || Sbjct 21962 TCCGGCAGTTGAACTTCCTTCATGAAGCGGGCAGCAAGGTTCTCCACCACGATGCCATCC 21903 Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 36600 ||| || ||||| ||||| || || || ||||| Sbjct 21902 GAGGCAGCGAAAAAGGCCAACACGTGCTTGATAAA 21868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658051868975160