Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq7184 134 1e-26 seq201 116 4e-21 seq3021 113 4e-20 seq6154 109 5e-19 seq4150 107 2e-18 seq1075 102 8e-17 seq14654 82.4 8e-11 seq119 82.4 8e-11 >seq7184 Length=931 Score = 134 bits (148), Expect = 1e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 |||||| || ||||| | || ||||| || || ||||| || ||| || |||| Sbjct 611 ACGCAACACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCC 670 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| || ||||| || |||||| ||||||| || |||||||||||||| |||||||| || Sbjct 671 GTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCGGGAGGGATGCCTTCCTT 730 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| ||||| || | | ||| | ||||| | || ||||| || | ||| | Sbjct 731 GTCCTGGATCTTTTGCTTGACATTTTCAATAGTGTCAGAGGATTCCACTTCCAAGGTGAT 790 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||| | || || ||||| || |||||| Sbjct 791 GGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 827 >seq201 Length=21658 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| ||||| ||||| || ||| | Sbjct 13767 CCACCACGGAGACGAAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGCC 13708 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| || ||||| || || || |||||| ||| ||||| ||||||||| Sbjct 13707 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGAGGT 13648 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || || | | || | ||||||| | ||||||| Sbjct 13647 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCGATGGTGTCGGAGCTCTCCACC 13588 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | |||||||| || | || || ||||| |||||||| Sbjct 13587 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 13541 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||| | ||| ||||| | || ||||| || || ||||| || ||| | |||| Sbjct 13984 ACGAAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCC 13925 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| || | ||| || ||||| |||| || || ||||| |||||||| |||||||| || Sbjct 13924 GTCCTCCAACTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTT 13865 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || || | | || | ||||||| | |||||| || | ||| | Sbjct 13864 GTCCTGGATCTTCTGCTTGACGTTCTCGATGGTGTCGGAGCTCTCCACTTCCAGGGTAAT 13805 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||| | || || ||||| || |||||| Sbjct 13804 AGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCATA 13768 >seq3021 Length=1716 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || ||||| | || ||||| || || ||||| || ||| || |||| | Sbjct 1 CGCAACACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCG 60 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || ||||| | |||||||| ||||||||||| || || || || || Sbjct 61 TCCTCCAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCGGGGGGGATTCCCTCCTTA 120 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| ||||| || | | || | ||||||| || ||||||||| | ||| | Sbjct 121 TCCTGGATCTTTTGCTTCACATTCTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATA 180 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| || | ||| || ||||| || ||||| Sbjct 181 GTTTTGCCTGTGAGCGTCTTCACGAAGATCTGCAT 215 >seq6154 Length=1076 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| ||||| | || ||||| || || ||||| || ||| Sbjct 940 GCCACCGCGGAGACGAAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 881 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | ||| || ||||| || || || |||||| |||||||||||||| || Sbjct 880 CAGGGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGATCGGGGGG 821 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| || || || | | || | ||||| | || |||||| Sbjct 820 AATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGACTCCAC 761 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||| || || | || || ||||| |||||||| Sbjct 760 CTCCAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAAATTTGCAT 713 >seq4150 Length=1450 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | |||||||| || || ||||| || ||| || || | ||| || Sbjct 7 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGACCGTCCTCC 66 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || || |||||| |||||||||||||| || ||||| || ||||| | Sbjct 67 AGCTGCTTGCCCGCGAAGATCAAGCGTTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGG 126 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || || | | || | ||||| | | ||||||||||| ||| | |||||| Sbjct 127 ATCTTCTGCTTCACGTTCTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTG 186 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || || ||||| |||||||| Sbjct 187 CCAGTGAGGGTCTTGACGAAGATTTGCAT 215 >seq1075 Length=2391 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || || ||||| || ||| || |||| ||| || Sbjct 1429 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCC 1370 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || ||| |||| || || ||||| ||||| || ||||| || ||||| | Sbjct 1369 AGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 1310 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || || | | || | ||||||| | ||||||||| | || | |||||| Sbjct 1309 ATCTTCTGCTTGACGTTCTCGATGGTGTCGGAGCTCTCCACCTCCAGAGTGATGGTCTTG 1250 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | || || ||||| |||||||| Sbjct 1249 CCGGTGAGGGTCTTGACGAAAATTTGCAT 1221 >seq14654 Length=53260 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896 ||||| || || |||||||| |||||| | | || | | || || | | ||| Sbjct 48125 GAGGCAGTGGAGATTGAAAAGGAGTTTGTGAGCGAGTCCCTTCCAGTGAGGCTCATCGGC 48066 Query 52897 ATGAACG-CGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCA 52955 ||||||| ||| | | |||||| ||||||| |||||||| |||||| | ||| || || Sbjct 48065 ATGAACGCCGAGC-TCATGTGCCAGTACATTGAGTTTGTGGCGGACCGCCTGCTGGTGGC 48007 Query 52956 GCTCGGTCAGC-CGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATAT 53014 ||||| | || ||| ||| || || ||||| ||| | ||| | ||| | Sbjct 48006 CCTCGG-CTGCGAGAAGATCTACAACGCTACGAACCCGTTTGACTGGATGGAGCTCATCT 47948 Query 53015 CGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTA 53060 | | || ||||| || |||||||||||||| || ||||| ||||| Sbjct 47947 CCTTGGAAGGCAAGACCAACTTTTTCGAGAGGCGCGTGGGAGAGTA 47902 >seq119 Length=72801 Score = 82.4 bits (90), Expect = 8e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 |||||| || ||| || ||||| || || ||| || || ||| |||||| ||||| Sbjct 21713 GTGAATGGTGCTCTCCTTCTGAATATTGTAGTCGGCCAGGGTCCTCCCGTCTTCCAGCTG 21654 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 | || ||| |||| || ||||| || ||||| || ||||| || ||||| ||||| Sbjct 21653 CATGCCGGCAAAGATGAGGCGTTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGTATTTT 21594 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | || | | || | ||||||| ||| ||||| | ||| || ||||||||||| Sbjct 21593 CAGCTTGACCACCTCGATGGTGTCGGAGGGGTCCACGGAGAGGGTTACGGTCTTGCCGGT 21534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495972854440800