Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1590 89.7 4e-13 seq14642 87.8 1e-12 seq6154 86.0 5e-12 seq1075 84.2 2e-11 seq629 82.4 6e-11 >seq1590 Length=2191 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| ||||| | | ||||| |||| ||| |||||| || | ||||| |||| Sbjct 114 GCCTCCCCGCAGACGAAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 173 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || || |||| || | ||| || ||||| || |||| || || || |||| || Sbjct 174 CAAGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGTTGCTGGTCGGGAGG 233 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| || ||||| | | | |||||| | ||| || Sbjct 234 GATGCCTTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCGATGGTGTCGGATGACTCCAC 293 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || ||||| || || || ||| | |||||||||||| Sbjct 294 TTCGAGGGTAATGGTCTTTCCCGTGAGGGTCTTCTCGAAAATTTGCATT 342 >seq14642 Length=99085 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | ||| | | ||||| |||| |||| |||||| || | ||||| |||| Sbjct 59316 GCCTCCCCTCAGACGAAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 59375 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| ||||| |||| |||| || ||||||||||| || | ||||| || || | || Sbjct 59376 CAAGGTACGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGG 59435 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || |||| | ||||| | | | |||||| ||| ||| | Sbjct 59436 AATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTCTCGATGGTGTCG-GAGCTCTCCA 59494 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 | || | || || || ||||| || || || || || || ||||||||| Sbjct 59495 CCTCGAGGGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATTTGCATT 59544 >seq6154 Length=1076 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| |||| ||| |||||| || | ||||| |||| || ||||| |||| ||| Sbjct 921 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGACCGTCCTCC 862 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | || |||||||| || ||||| || || ||||||| || | ||||| || || | Sbjct 861 AGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGG 802 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| || || || | | | ||||| | ||| || || | || || || ||| Sbjct 801 ATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGACTCCACCTCCAGGGTGATGGTCTTT 742 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || || || || || |||||||||||| Sbjct 741 CCAGTGAGGGTCTTGACGAAAATTTGCATT 712 >seq1075 Length=2391 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | ||| | | ||||| |||| ||| |||||| || | ||||| |||| Sbjct 1448 GCCTCCCCTCAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 1389 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || || |||| |||| || ||||||||||| || | ||||| || |||| || Sbjct 1388 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGG 1329 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | || || || || |||| || ||||| | | | |||||| ||| ||| | Sbjct 1328 AATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCGATGGTGTCGG-AGCTCTCCA 1270 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 | || | || || || || ||||| || || || || |||||||||||| Sbjct 1269 CCTCCAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATTTGCATT 1220 >seq629 Length=7623 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| |||| ||| |||||| || | |||||||| | | || || |||| ||| Sbjct 3945 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCGAGAGTGCGACCGTCCTCC 3886 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | || |||||||| || ||||| ||||| || |||| || | ||||| || || | Sbjct 3885 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGG 3826 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| || || || | | | ||||| || |||||| || | || || || || Sbjct 3825 ATCTTCTGCTTCACGTTCTCGATGGTGTCAGAAGACTCGACCTCCAGAGTGATGGTCTTG 3766 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || || || || || |||||||||||| Sbjct 3765 CCAGTGAGGGTCTTGACGAAAATTTGCATT 3736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381301279900542