Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 167 3e-36 seq182 156 6e-33 >seq3 Length=147229 Score = 167 bits (184), Expect = 3e-36 Identities = 442/673 (66%), Gaps = 4/673 (1%) Strand=Plus/Plus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 || ||||| |||||||| ||| | || || ||| ||| || ||||| | || ||| Sbjct 143720 TCAAACTCCTCTCCCCAGACATCAGCCAAGCCGGGAGCTTCGTTGGGACAAAACAGGGAC 143779 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063 ||||| || | ||||| ||||| || || || |||| ||| || || ||| Sbjct 143780 CACTCCTGATTGCTCTCCACTCGCTTCATGAATAGGTCCGGAACCCAGAGCGCGTAAAAG 143839 Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123 || ||||||| | ||||||| || || ||||| || || || || ||| | | | Sbjct 143840 AGGTCTCTGGCGCGCAGCTCCTCCTTGCCGTGGTTCTTCTTCAGCTCCAGAAACTCGAAA 143899 Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183 | || | ||||| || |||||||| | || | | |||| |||||| |||||| Sbjct 143900 ACGTCCGCGTGCCATGGCTCCAAGTAGACAGCAAAAGCTCCTTTGCGTTTGCCTCCTCCT 143959 Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243 || || | |||||| || |||| ||| | || | | ||| || || | ||| || || Sbjct 143960 TGGTCGACGTATCTGGCAGTGTCGTTAAAGACGCGAAGCATCGGGATGAGACCGTTCGAC 144019 Query 72244 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCT 72303 | ||||| || || ||| ||||| |||||| || || | || || Sbjct 144020 GTGCCATTAGTTCCACGGATGTAGCTGTGCGAGGCACGGATTGTGTGTACGCTGAGGCCG 144079 Query 72304 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 72363 || || || || || ||||| || |||||| | |||| || || ||||||||||| Sbjct 144080 ATGCCACCAGCGGCCTTGGAGATCAAGGCGCATTGCTTTAGGGTGTCGTAGATGCCCTCG 144139 Query 72364 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 72423 || || || ||| |||| | || | ||| ||| ||| | ||| | || || || Sbjct 144140 ATGCTGTCCTCCCTCATCGTGAGCAAAAAGCAGGAAGAGAGTTGCGGCCGCTCTGTGCCG 144199 Query 72424 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 72483 || || || | || || | ||||| ||||| | | |||| |||||||| ||| Sbjct 144200 GCGTTGAAGAGAGTGGGGGTGGCGTGAGTAAAGTAGAGGTTGGACATGAGATTGTAGGTC 144259 Query 72484 TCAATAGCTGATTC--TATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATAT 72541 ||||| || | | | | |||||| ||| || || | || || ||||| | ||| | Sbjct 144260 TCAATGGCAGCAGCAATGTCTCCCAT--ATGGATGCCGATGGCAACTCGCATGATCATGT 144317 Query 72542 GCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 72601 | ||||| || |||||||||||| | | || || | |||| | ||||| || | Sbjct 144318 GTTGAGGCCTCTCAACGATCTTGCCCTCCACCTTGAAGAGGTAGCTCCTCTCCAAGGTCT 144377 Query 72602 TAAAACCAAAATA 72614 |||| ||||| || Sbjct 144378 TAAAGCCAAAGTA 144390 >seq182 Length=84632 Score = 156 bits (172), Expect = 6e-33 Identities = 318/468 (68%), Gaps = 6/468 (1%) Strand=Plus/Minus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| || ||| || || || || |||| || ||||| || || || | |||||| Sbjct 22319 AACAGCATACAAGCAAAGTCACAATGCATGCCTTCATCCCTGCTTATGAGCTCGTTGCTG 22260 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCC 42174 || |||| || ||||| || || | || || ||||| || || | |||| || || || Sbjct 22259 AAGCTGAGCCCAGGCATCAGCCCTCTTTTCTTCAGCCAGAAGATGG-CGCAGAAGGAGCC 22201 Query 42175 AGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACC--GGCA 42232 || |||||||| ||||| ||||| ||||||||||| || | | || || | | Sbjct 22200 CGAGAAGAAGATGCCTTCCACTGCGGCAAAGGCAATGAGCCGCAGAGCAAAAGCTTGTGG 22141 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 || | | |||||| | ||||| ||||||||||| || || | ||||| ||| || Sbjct 22140 CTTT--TCTATCCAACGCAGCGCCCATTCGGCCTTCTTCTTCACGCTAGGCACCGTCTCA 22083 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 ||||| |||||||| | ||||| || ||||| || || || ||||| | || Sbjct 22082 ATGGCGTTAAAGAGCTTAGCCTTTTCTTTCACGTCTTTGACGTAGGTGTCGATGAGCAGC 22023 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 ||||| || || || ||||| || ||||| || ||||| |||||||| || | ||| Sbjct 22022 GAGTACATCTCCGAGTGGATGTTCTCCATGGCGATTTGAAAGCCGTAGAAGCAACGTGCC 21963 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 || | | || ||||| | || || |||| | || || ||| || || || Sbjct 21962 TCCGGCAGTTGAACTTCCTTCATGAAGCGGGCAGCAAGGTTCTCCACCACGATGCCATCC 21903 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCC 42520 ||| || ||||| ||||| || || || ||||| | ||||||| Sbjct 21902 GAGGCAGCGAAAAAGGCCAACACGTGCTTGATAAAGTGGCGTTCGTCC 21855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671015886561240