Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq14654 233 3e-56 seq3 163 4e-35 seq182 158 2e-33 >seq14654 Length=53260 Score = 233 bits (258), Expect = 3e-56 Identities = 594/893 (67%), Gaps = 27/893 (3%) Strand=Plus/Minus Query 124967 CCTCGAAGAGCCCAGCAGTAGATTTACCCTGTTTCCCATCAGGTATCATGACATTTGGGA 125026 |||||| ||| |||| | ||| ||||| ||||| | | || | || ||||| Sbjct 48789 CCTCGAGGAGAACAGCTCCCGCTTTGTGCTGTTCCCCATTCGCCACCACAAGATCTGGGA 48730 Query 125027 AATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGA 125086 |||||||| ||||| ||||| ||| ||||| | ||| ||||| || || || | || Sbjct 48729 GATGTACAAGAAGGCCGAGGCCAGCTTCTGGACCGCCGAGGAGGTGGACCTTGCCCAAGA 48670 Query 125087 CCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTT 125146 || ||| ||| ||| | | |||| ||||| | ||||| | ||| | | Sbjct 48669 TCTCACCGACTGGAAGAAGCTCT---CTGAGGACGAGCGCTATTTTATCACCCACGTCCT 48613 Query 125147 GGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCA 125206 |||||||||||||| ||| || |||||||| || || || || ||| | Sbjct 48612 GGCCTTCTTTGCCGCCTCGGACGGAATCGTTGTGGAGAACTTGGCCGTCCGCTTCATGAA 48553 Query 125207 AGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGATTGAGAACG 125265 ||| || | || |||| ||| ||||| ||||| || || ||| |||||||| Sbjct 48552 GGAGGTGCAAGTACCCGAGGC-TCGCTGCTTCTACGGCTTTCAGATCGCCATTGAGAATA 48494 Query 125266 TGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAAC 125325 | |||||||| |||||||| ||||| |||| ||| | || || || Sbjct 48493 TCCACTCGGAGATGTACTCCCTCCTGATCGACACCTACGTGAAGGACCCCTTGGAGAAGG 48434 Query 125326 ACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGA 125385 || ||||| ||||| ||||| || ||||| | | || || || ||| | |||| | Sbjct 48433 ACCGCCTCTTCAACGCCATCGAGACCGTGCCTACCGTCCGAAAGAAAGCTGAGTGGGCCA 48374 Query 125386 TTCGGTGGATCGATGACGACAA-GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCC 125444 | |||||| || || | | | ||| | | ||| | | ||||| ||||| || Sbjct 48373 TCAAGTGGATAGAAAACCCCGACGGCTTTGCTCACCGGC----TCGTGGCCTTCGCTGCT 48318 Query 125445 GTAGAGGGCATCTTCTTTTCGGGTAG-TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGG 125503 || ||||||||||| || || ||| ||||||| ||||||||||| | |||||| | || Sbjct 48317 GTGGAGGGCATCTTTTTCTCTGGTTCCTTTTGCG-CCATCTTTTGGTTGAAGAAGAGAGG 48259 Query 125504 ACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTG 125563 || ||||| ||||| |||||| ||| || | ||||||||| | ||||| Sbjct 48258 CCTTATGCCTGGACTTTGTTTCAGTAATGAGCAGATCAGCAGGGACGAGGGCATGCACTG 48199 Query 125564 TGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGA 125623 |||||||||| || || | || || || ||| || |||| || | | || Sbjct 48198 TGACTTTGCCTGCCTCCTCT------ACAATATGA-TCCAGAA--CAGACCCTCCAACGA 48148 Query 125624 AAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATC 125683 | || ||| ||| | | || || ||| ||| ||| | |||||| | | ||| || Sbjct 48147 CGTGCCCACCAAGATTATCGCTGAGGCAGTGGAGATTGAAAAGGAGTTTGTGAGCGAGTC 48088 Query 125684 CCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGT 125743 ||| || || || | || ||||||||| | |||| |||||| ||||||| |||||||| Sbjct 48087 CCTTCCAGTGAGGCTCATCGGCATGAACGCCGAGCTCATGTGCCAGTACATTGAGTTTGT 48028 Query 125744 GGCAGATCGTCTACTGTACGAGTTGATTGGCCGC---AAGATTTACAACGCCAAGAATCC 125800 ||| || || || ||| | | | ||| || ||||| |||||||| | ||| || Sbjct 48027 GGCGGACCGCCTGCTG---GTGGCCCTCGGCTGCGAGAAGATCTACAACGCTACGAACCC 47971 Query 125801 CTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGA 125853 ||||| | ||| ||| || | || || ||||||||||||||||||| Sbjct 47970 GTTTGACTGGATGGAGCTCATCTCCTTGGAAGGCAAGACCAACTTTTTCGAGA 47918 >seq3 Length=147229 Score = 163 bits (180), Expect = 4e-35 Identities = 336/497 (68%), Gaps = 12/497 (2%) Strand=Plus/Minus Query 96888 AAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTT 96947 ||||| ||| ||| | || ||||||||||| || ||||||||||||||||| || ||| Sbjct 143949 AAACGCAAAGGAGCTTTTGCTGTCTACTTGGAGCCATGGCACGCGGACGTTTTCGAGTTT 143890 Query 96948 ATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCA 97007 | ||| || || ||| ||| || ||| || ||||| ||| | ||||| || Sbjct 143889 CTGGAGCTGAAGAAGAACCACGGCAAGGAGGAGCTGCGCGCCAGAGACCTCTTTTACGCG 143830 Query 97008 CTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATG 97067 |||||||| || || | ||||||||||| || | | | | ||| ||| | Sbjct 143829 CTCTGGGTTCCGGACCTATTCATGAAGCGAGTGGAGAGCAATCAGGAGTGGTCCCTGTTT 143770 Query 97068 TGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTAC 97127 || ||| || | ||||| || | ||| |||||| || ||||||||||| ||| Sbjct 143769 TGTCCCAACGAAGCTCCCGGCTTGGCTGATGTCTGGGGAGAGGAGTTTGAGGCGCTCTAC 143710 Query 97128 ACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAG 97187 || ||||| || ||||||||| | ||| | || | || | ||| || ||| Sbjct 143709 ACTCGATACGAACAGGAGGGCCGAGCCAGGAGGAGCGTTAAGGCCCAAGAGCTCTGGTTC 143650 Query 97188 GCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTG 97247 |||||| || | ||| ||||||| || || || || || || |||||||| |||| Sbjct 143649 GCCATCCTGGAGAGCCAGATAGAGACCGGCACGCCCTATATGCTATACAAGGA-CTCGTG 143591 Query 97248 -AATCGCAACAGCAACCAACGCCACTTGGGCACCA-----TCAAGGGCTCCAATCTGTGC 97301 || ||||| |||||||| || | ||||||| ||||| ||| || ||| Sbjct 143590 CAACCGCAAGTCCAACCAACAGAACCTCGGCACCATTCGTTCAAG-----CAACCTTTGC 143536 Query 97302 ACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTC 97361 ||||| || | |||||| |||| |||||| ||| || ||| || || || || Sbjct 143535 ACGGAGATCATGGAGTACACCTCCAAGGACGAAGTGGCTGTGTGCAACCTCGCTTCTCTC 143476 Query 97362 AATCTGCCCAAGTTTGT 97378 ||| ||||||||||| Sbjct 143475 GCTCTTCCCAAGTTTGT 143459 >seq182 Length=84632 Score = 158 bits (174), Expect = 2e-33 Identities = 394/575 (69%), Gaps = 29/575 (5%) Strand=Plus/Plus Query 125011 ATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGG 125070 |||| || |||||||||||||||| ||||| ||||| |||||||||||| || |||| Sbjct 21749 ATCACAACCTTTGGGAAATGTACAAGAAGGCCCAGGCTAGCTTTTGGACGGTGGAGGAGG 21808 Query 125071 TCGATCTGTCCAAGGACCTGTACGATTGG-GAGACTCGTTTGACTGAA--ACTGAGCGAG 125127 | || ||| ||||||| ||| ||| | || | ||| || | || || || Sbjct 21809 TAGACCTGGTGCAGGACCTTACCGACTGGAGCCACAAGCTTG--TGGAGGAC-GAACGCC 21865 Query 125128 AGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC 125187 | ||||| |||| | |||||||| || || | ||| ||||| ||||| || || | Sbjct 21866 ACTTTATCAAGCACGTGTTGGCCTTTTTCGCTGCCTCGGATGGCATCGTGGTGGAGAACC 21925 Query 125188 -TGTTGACACGATTCTCTCAAG--AGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGAT 125244 || || | || ||| | ||| |||| | | | || |||| ||||| ||||| | Sbjct 21926 TTGCTG-CCCGCTTC-ATGAAGGAAGTTCAAC-TGCCGGAGGCACGTTGCTTCTACGGCT 21982 Query 125245 TCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACA 125304 | |||||| || |||||| | |||||||| |||||||| || || |||| ||| Sbjct 21983 TTCAAATCGCCATGGAGAACATCCACTCGGAGATGTACTCGCTGCTCATCGACACCTACG 22042 Query 125305 TTCGCGATCCGCAACGTAAACAC-ATGCTCTTTAACGCAATCGACACGGTGCCGTCTATA 125363 | || | || | ||| | | |||||||||||| || || ||||||| ||| Sbjct 22043 TCAAAGA-CGTGAAAGAAAAGGCTAAGCTCTTTAACGCCATTGAGACGGTGC---CTA-G 22097 Query 125364 CGT----AAAAAGGCTCAATGGGTGATTCGGTGGATCGATGA-CGACAAGTCTTCGTACG 125418 ||| || ||||| |||||| | | || ||||| || | | ||||| ||| | | Sbjct 22098 CGTGAAGAAGAAGGCCGAATGGGCGCTGCGTTGGATAGAAAAGCCACAAG-CTT-TTGCT 22155 Query 125419 CCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCG 125477 | | | || | || || ||||| || || ||||||||||| ||||| | || ||| Sbjct 22156 CTG--CGGCTCATTGCCTTTGCCGCAGTGGAAGGCATCTTCTTCTCGGGCTCCTTCTGC- 22212 Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537 |||||||| ||||| ||||| | || || ||||| || || | ||| |||||| | Sbjct 22213 GCCATCTTCTGGCTGAAGAAAAGAGGGCTGATGCCTGGGCTCAGCTTCAGCAACGAGCTC 22272 Query 125538 ATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 ||| | || || ||| | || ||||||||||| Sbjct 22273 ATAAGCAGGGATGAAGGCATGCATTGTGACTTTGC 22307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740923039635240