Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq629 84.2 2e-11 seq294 84.2 2e-11 seq11709 82.4 6e-11 >seq629 Length=7623 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || || || ||||||||||| ||| | | |||| || Sbjct 3945 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCGAGAGTGCGACCGTCCTCC 3886 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| ||| | |||||||| || |||||| ||||| ||||| ||||| Sbjct 3885 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGG 3826 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || | || ||||| || | || || || | || ||||| || Sbjct 3825 ATCTTCTGCTTCACGTTCTCGATGGTGTCAGAAGACTCGACCTCCAGAGTGATGGTCTTG 3766 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||||||||| Sbjct 3765 CCAGTGAGGGTCTTGACGAAAATTTGCAT 3737 >seq294 Length=52215 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || ||||| || || || || |||||||| ||| || | | |||| || Sbjct 28748 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCGTCCTCC 28807 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| ||||| ||| | |||| ||||| |||||| || || ||||| ||||| Sbjct 28808 AGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGG 28867 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || | || ||||| ||| | || || || ||||||||||| ||| Sbjct 28868 ATCTTCTGCTTCACGTTCTCGATGGTGTCGGAGCTCTCCACCTCCAAGGTAATGGTCTTA 28927 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| || || || || || ||||| Sbjct 28928 CCAGTCAAGGTCTTGACGAAGATCTGCAT 28956 >seq11709 Length=580 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/210 (69%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || ||||| || || || || |||||||| ||| || | | |||| || Sbjct 234 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCGTCCTCC 293 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||| ||| | |||| ||||| |||||| ||||| || || ||||| Sbjct 294 AGCTGTTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGG-GGAATACCCTCCTTGTCTTGG 352 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || | || ||||| ||| | || || || ||||||||||| ||| Sbjct 353 ATCTTTTGCTTGACGTTCTCGATGGTGTCGGAGCTCTCCACCTCCAAGGTAATGGTCTTA 412 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || || || || || |||||| Sbjct 413 CCAGTCAAGGTCTTGACGAAGATCTGCATA 442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362114317746759