Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq5330 100 2e-16 seq294 91.5 1e-13 seq7184 89.7 4e-13 seq4150 86.0 5e-12 seq3021 86.0 5e-12 seq1075 86.0 5e-12 seq5 86.0 5e-12 seq14642 82.4 6e-11 >seq5330 Length=1214 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||||||||| | ||||||||||| || | || | | ||||||||||||| || ||| Sbjct 671 GTAGACTCCTTCAGGATATTGTAATCAGCTAGAGTGTGGCCGTCCTCCAGCTGCTTGCCC 730 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || |||| ||||||| || | |||||| ||||| || || || || Sbjct 731 GCGGAGATCAGTCGTTGCTGATTGGGAGGGATGCCCTCCTTGTCTTGGATCTTTTGCTTC 790 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| ||||||| || ||| || | || ||||| || || || | || Sbjct 791 ACGTTCTCGATAGTATCGGAAGACTCGACCTCAAGAGTGATGGTCTTTCCCGTGAGGGTC 850 Query 19025 TTGACAAAAATTTGCATTTT 19044 ||||| |||||||||||||| Sbjct 851 TTGACGAAAATTTGCATTTT 870 >seq294 Length=52215 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| |||||||||||||| || | || | |||||||||| || || || Sbjct 28988 GTGGACTCCTTCTGAATATTGTAATCAGCGAGGGTACGGCCGTCCTCCAGTTGCTTGCCG 29047 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || | | |||||| || ||| | ||||| ||||| || ||||| || Sbjct 29048 GCGAAGATCAAGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTC 29107 Query 18965 ACCTGGCCGACAGTATCGCCAGG-CTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | ||| || || | ||| |||| ||||| ||| ||||| || || || | || Sbjct 29108 ACGTTCTCGATGGTGTC-CGAGGACTCCACTTCGAGGGTGATGGTCTTTCCCGTGAGGGT 29166 Query 19024 TTTGACAAAAATTTGCATT 19042 ||||| |||||||||||| Sbjct 29167 CTTGACGAAAATTTGCATT 29185 >seq7184 Length=931 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || ||||||||||| || |||||||| |||| || | |||||||| Sbjct 162 ACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATCAGCCAAGGTGCGGCCGTCCTCC 221 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || || | || || | |||||| || ||| | |||||| ||||| Sbjct 222 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 281 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || || | ||| || ||| |||| ||| | ||| ||||| || Sbjct 282 ATCTTTTGCTTCACGTTCTCGATGGTGTCGGAGCTCTCCACTTCCAGGGTGATGGTCTTT 341 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||| ||||| || || ||||| Sbjct 342 CCGGTAAGAGTCTTGACGAAGATCTGCAT 370 >seq4150 Length=1450 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||||||||| || || ||||| || |||| || |||||||| Sbjct 7 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGACCGTCCTCC 66 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || ||||| | || | | |||||||| ||| | |||||| ||||| Sbjct 67 AGCTGCTTGCCCGCGAAGATCAAGCGTTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGG 126 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || ||||| || || | ||| || || || |||| || | ||| ||||| || Sbjct 127 ATCTTCTGCTTCACGTTCTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTG 186 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | || ||||| || ||||||||| Sbjct 187 CCAGTGAGGGTCTTGACGAAGATTTGCATT 216 >seq3021 Length=1716 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| ||| | || |||||||| || || ||||| || |||| || | ||||| Sbjct 4 AACACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCC 63 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||||||| || || || |||| || | ||||||||| ||| | ||||| || || Sbjct 64 TCCAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGATCGGGGGGGATTCCCTCCTTATCC 123 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 || || || || || | ||| || ||| | |||| |||| ||| || ||| Sbjct 124 TGGATCTTTTGCTTCACATTCTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATAGTT 183 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || ||||| | || || || || || ||||| Sbjct 184 TTGCCTGTGAGCGTCTTCACGAAGATCTGCAT 215 >seq1075 Length=2391 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || |||||||| || || ||||| || |||| || | |||||||| Sbjct 1429 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCC 1370 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || ||| | || || | |||||| || ||| | |||||| ||||| Sbjct 1369 AGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 1310 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || ||||| || || | ||| || ||| |||| || | || ||||| || Sbjct 1309 ATCTTCTGCTTGACGTTCTCGATGGTGTCGGAGCTCTCCACCTCCAGAGTGATGGTCTTG 1250 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | || ||||| |||||||||||| Sbjct 1249 CCGGTGAGGGTCTTGACGAAAATTTGCATT 1220 >seq5 Length=69586 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||||||||| || || ||||| || || | || | |||||||| Sbjct 14163 ACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCC 14222 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || || | || | | ||||| ||| ||| | ||| || ||||| Sbjct 14223 AGCTGCTTGCCGGCGAAGATCAAACGTTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGG 14282 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || ||||| || || | ||| || || || |||| ||||| || ||||| || Sbjct 14283 ATCTTCTGCTTCACGTTCTCGATGGTGTCCGAAGACTCCACTTCGAGAGTGATGGTCTTT 14342 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | || ||||| |||||||||||| Sbjct 14343 CCCGTGAGGGTCTTGACGAAAATTTGCATT 14372 >seq14642 Length=99085 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || |||||||| || || ||||| || |||| || | |||||||| Sbjct 59335 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCGTCCTCC 59394 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || ||| | || || | |||||| || ||| | ||| || ||||| Sbjct 59395 AGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGG 59454 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || || | ||| || ||| |||| |||| ||| ||||| || Sbjct 59455 ATCTTTTGCTTGACGTTCTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTT 59514 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | || ||||| || ||||||||| Sbjct 59515 CCCGTGAGGGTCTTGACGAAGATTTGCATT 59544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414498531744406