Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq182 105 2e-17 seq14654 102 2e-16 seq294 102 2e-16 seq629 98.7 2e-15 seq201 98.7 2e-15 seq53 95.1 3e-14 seq11709 86.0 1e-11 seq104 86.0 1e-11 >seq182 Length=84632 Score = 105 bits (116), Expect = 2e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 269139 TTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGT 269198 |||| |||||||| || ||||| || ||||| ||||| || || ||| ||||| ||| Sbjct 22166 TTGCCTTTGCCGCAGTGGAAGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGC 22225 Query 269199 TGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACG 269258 ||||||||||||| || ||||| || | | ||| ||||| | ||||||||||| | Sbjct 22226 TGAAGAAAAGAGGGCTGATGCCTGGGCTCAGCTTCAGCAACGAGCTCATAAGCAGGGATG 22285 Query 269259 AAGGTTTACACTGCGACTTCGCTTGT 269284 |||| | || || ||||| |||||| Sbjct 22286 AAGGCATGCATTGTGACTTTGCTTGT 22311 >seq14654 Length=53260 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || || || ||||| || || || || || || || || ||| ||| ||||||||| Sbjct 48332 GTGGCCTTCGCTGCTGTGGAGGGCATCTTTTTCTCTGGTTCCTTTTGCGCCATCTTTTGG 48273 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 |||||||| |||||||||||||| ||| | |||| ||| || ||| ||||||||| Sbjct 48272 TTGAAGAAGAGAGGCCTTATGCCTGGACTTTGTTTCAGTAATGAGCAGATCAGCAGGGAC 48213 Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283 || || | ||||| ||||| || || Sbjct 48212 GAGGGCATGCACTGTGACTTTGCCTG 48187 >seq294 Length=52215 Score = 102 bits (112), Expect = 2e-16 Identities = 171/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 104323 TTTATTTAT--TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATA 104380 |||||||| ||| || | || | ||| || | || | ||||| || ||||| || Sbjct 28718 TTTATTTACAGTCCGCCACGAAGACGAAGGACCAAGTGGAGGGTAGACTCCTTCTGGATG 28777 Query 104381 TTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGT 104440 || ||||| | || || | |||||| || ||||| || || || || || || | || Sbjct 28778 TTGTAGTCGGCCAGGGTGCGACCGTCCTCCAGTTGCTTGCCGGCGAAGATCAGGCGTTGC 28837 Query 104441 TGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATC 104499 || || ||||| || ||||| || ||||| ||||| ||||| || || || | ||| || Sbjct 28838 TGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATGGTGTC 28896 Query 104500 GCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCA 104558 | || | || ||||| | ||||| ||||||||||| | || || || || ||||||| Sbjct 28897 GG-AGCTCTCCACCTCCAAGGTAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCA 28955 Query 104559 T 104559 | Sbjct 28956 T 28956 Score = 91.5 bits (100), Expect = 3e-13 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | ||| || || || | || || || ||||||||||| || ||| Sbjct 28955 ATGCCTCCCCTCAGACGAAGGACGAGGTGGAGGGTGGACTCCTTCTGAATATTGTAATCA 29014 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | ||||| || ||||| || || || || || | | ||| || ||||| Sbjct 29015 GCGAGGGTACGGCCGTCCTCCAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGG 29074 Query 104450 GGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGG-TT 104507 || || || || || ||||| ||||| ||| || || || || | ||| || | ||| | Sbjct 29075 GGAATACCCTCCTTGTCCTGGATCTTCTGC-TTCACGTTCTCGATGGTGTC-CGAGGACT 29132 Query 104508 CTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || || || ||||| || || || || || || || || |||||| || Sbjct 29133 CCACTTCGAGGGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAAATTTGCATTGTG 29188 >seq629 Length=7623 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || || || Sbjct 4161 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCG 4102 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || | | ||| || ||||| || || || || || ||||||||||| ||| || Sbjct 4101 GCGAAGATCAAGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGAATCTTCTGC-TT 4043 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 |||||||| | ||| || | ||| ||||| || || || ||||| ||||| || || Sbjct 4042 GACATTTTCAATGGTGTCAGAGGATTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGT 3983 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 3982 CTTGACGAAGATCTGCAT 3965 >seq201 Length=21658 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | ||| || | || | || || || ||||| || || ||||| Sbjct 13998 ATGCCTCCCCTCAGACGAAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 13939 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | ||||| || | || || ||||| || || || | ||| || || ||| Sbjct 13938 GCGAGGGTGCGGCCGTCCTCCAACTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGA 13879 Query 104450 GGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGT-T 104507 || || ||||| || ||||| ||||| ||||| || || || | ||| ||| || | | Sbjct 13878 GGAATGCCTTCCTTGTCCTGGATCTTCTGCTTG-ACGTTCTCGATGGTGTCGG-AGCTCT 13821 Query 104508 CTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || || || ||||||||||| || ||||| || || || || |||||||| Sbjct 13820 CCACTTCCAGGGTAATAGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 13769 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || |||| ||||| | || || || || || || || Sbjct 14193 GTGGACTCCTTCTGGATGTTGTAATCAGCGAGAGTGCGGCCATCCTCCAGCTGCTTGCCC 14134 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || ||||| || ||||| |||||| || Sbjct 14133 GCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTTTGCTTG 14074 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| || || | || ||||| | ||||||||||| ||||| | || Sbjct 14073 ACGTTCTCGATGGTGTCAG-AGCTCTCCACCTCCAAGGTAATAGTCTTGCCAGTTAAGGT 14015 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 14014 CTTGACGAAGATCTGCAT 13997 >seq53 Length=79819 Score = 95.1 bits (104), Expect = 3e-14 Identities = 89/111 (80%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTC-AGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 || || |||| ||| || || ||||| || || || | ||| ||||| || ||| | || Sbjct 30311 GTTGACTCTTGCTGGATGTTGTAGTCGAGCAAG-GTGCGACCATCTTCGAGCTGTATGCC 30253 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAAT 104472 ||| |||||||||| ||||||||| ||||| |||||||||||||| ||||| Sbjct 30252 AGCGAAAATTAGCCGCTGTTGATCCGGAGGAATTCCTTCTTTATCTTGAAT 30202 >seq11709 Length=580 Score = 86.0 bits (94), Expect = 1e-11 Identities = 140/198 (71%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||| | || || | |||||| || || ||||| || Sbjct 246 GTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCGTCCTCCAGCTGTTTGCCG 305 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | || || || || || || || || || || || |||||| || Sbjct 306 GCGAAGATCAGGCGTTGCTGGTCGGG-GGAATACCCTCCTTGTCTTGGATCTTTTGCTTG 364 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| ||| || | || ||||| | ||||| ||||||||||| | || Sbjct 365 ACGTTCTCGATGGTGTCGG-AGCTCTCCACCTCCAAGGTAATGGTCTTACCAGTCAAGGT 423 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 424 CTTGACGAAGATCTGCAT 441 >seq104 Length=38954 Score = 86.0 bits (94), Expect = 1e-11 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || ||||| | | || | ||||| || || || || || Sbjct 26229 GTGGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTACGGCCGTCCTCCAGCTGCTTGCCG 26288 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || ||||| || || ||||| || ||||| |||||| || Sbjct 26289 GCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTTTGCTTC 26348 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| ||| || | || ||||| | || || ||||||||||| || || Sbjct 26349 ACGTTCTCGATGGTGTCGG-AGCTCTCCACCTCCAAAGTGATTGTCTTACCAGTGAGGGT 26407 Query 104542 TTTTACAAATATCTGCATTTTGTGTACAGTATT 104574 || || || || |||| ||||||| ||| || Sbjct 26408 CTTGACGAAGATTTGCA--TTGTGTAGAGTTTT 26438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151181556059892