Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3 172 7e-38 seq182 159 4e-34 >seq3 Length=147229 Score = 172 bits (190), Expect = 7e-38 Identities = 443/673 (66%), Gaps = 4/673 (1%) Strand=Plus/Plus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 || ||||| |||||||| |||| |||| || ||| ||| | ||||| | || ||| Sbjct 143720 TCAAACTCCTCTCCCCAGACATCAGCCAAGCCGGGAGCTTCGTTGGGACAAAACAGGGAC 143779 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257 ||||| | || |||||| ||||| || || || |||| ||| || || ||| Sbjct 143780 CACTCCTGATTGCTCTCCACTCGCTTCATGAATAGGTCCGGAACCCAGAGCGCGTAAAAG 143839 Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317 || ||||||| | | ||||| || || ||||| || || || || ||| | | | Sbjct 143840 AGGTCTCTGGCGCGCAGCTCCTCCTTGCCGTGGTTCTTCTTCAGCTCCAGAAACTCGAAA 143899 Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377 | || | ||||| || |||||||| | || | | |||| |||||| |||||| Sbjct 143900 ACGTCCGCGTGCCATGGCTCCAAGTAGACAGCAAAAGCTCCTTTGCGTTTGCCTCCTCCT 143959 Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437 || || | |||||| || |||| ||| | || | | ||| || || | |||||| || Sbjct 143960 TGGTCGACGTATCTGGCAGTGTCGTTAAAGACGCGAAGCATCGGGATGAGACCGTTCGAC 144019 Query 63438 ATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63497 | ||||| || || ||| ||||| |||||| || | | || || Sbjct 144020 GTGCCATTAGTTCCACGGATGTAGCTGTGCGAGGCACGGATTGTGTGTACGCTGAGGCCG 144079 Query 63498 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCT 63557 || || || || || ||||| || |||||| | |||| ||||| ||||| ||||| Sbjct 144080 ATGCCACCAGCGGCCTTGGAGATCAAGGCGCATTGCTTTAGGGTGTCGTAGATGCCCTCG 144139 Query 63558 ATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 63617 ||||| || || |||| | || | ||| ||| ||| | ||| | || || || Sbjct 144140 ATGCTGTCCTCCCTCATCGTGAGCAAAAAGCAGGAAGAGAGTTGCGGCCGCTCTGTGCCG 144199 Query 63618 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63677 || || || | || || | ||||| ||||| | | || | |||||||| ||| Sbjct 144200 GCGTTGAAGAGAGTGGGGGTGGCGTGAGTAAAGTAGAGGTTGGACATGAGATTGTAGGTC 144259 Query 63678 TCAATAGCTGAGTCTATATC--CCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63735 ||||| || | | || || |||| ||| || || | || || ||||| | ||||| Sbjct 144260 TCAATGGCAGCAGCAATGTCTCCCAT--ATGGATGCCGATGGCAACTCGCATGATCATGT 144317 Query 63736 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63795 | ||||| || |||||||||||| | | || || | |||| | ||||| || | Sbjct 144318 GTTGAGGCCTCTCAACGATCTTGCCCTCCACCTTGAAGAGGTAGCTCCTCTCCAAGGTCT 144377 Query 63796 TAAAACCAAAATA 63808 |||| ||||| || Sbjct 144378 TAAAGCCAAAGTA 144390 >seq182 Length=84632 Score = 159 bits (176), Expect = 4e-34 Identities = 309/454 (68%), Gaps = 4/454 (1%) Strand=Plus/Minus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| || ||| || || || || |||| || || || || || || || |||||| Sbjct 22319 AACAGCATACAAGCAAAGTCACAATGCATGCCTTCATCCCTGCTTATGAGCTCGTTGCTG 22260 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || |||| || ||||| || || | || || ||||| || |||| ||| || || Sbjct 22259 AAGCTGAGCCCAGGCATCAGCCCTCTTTTCTTCAGCCAGAAGATGGCGCAGAAGGAGCCC 22200 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACC--GGCGC 33472 || |||||||| ||||| ||||| ||||||||||| || | | || || | | || Sbjct 22199 GAGAAGAAGATGCCTTCCACTGCGGCAAAGGCAATGAGCCGCAGAGCAAAAGCTTGTGGC 22140 Query 33473 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 | | | |||||| | ||||| ||||||||||| || || | ||||| ||| || | Sbjct 22139 TTT--TCTATCCAACGCAGCGCCCATTCGGCCTTCTTCTTCACGCTAGGCACCGTCTCAA 22082 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 |||| |||||||| | ||||| || ||||| || || || ||||| | || Sbjct 22081 TGGCGTTAAAGAGCTTAGCCTTTTCTTTCACGTCTTTGACGTAGGTGTCGATGAGCAGCG 22022 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 ||||| ||||| || ||||| || ||||| || ||||| |||||||| || | |||| Sbjct 22021 AGTACATCTCCGAGTGGATGTTCTCCATGGCGATTTGAAAGCCGTAGAAGCAACGTGCCT 21962 Query 33653 CGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCAC 33712 | | | || ||||| | || || | || | || || ||| || || || Sbjct 21961 CCGGCAGTTGAACTTCCTTCATGAAGCGGGCAGCAAGGTTCTCCACCACGATGCCATCCG 21902 Query 33713 TGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33746 ||| || ||||| ||||| || || || ||||| Sbjct 21901 AGGCAGCGAAAAAGGCCAACACGTGCTTGATAAA 21868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622832741238840