Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3 172 7e-38 seq182 150 2e-31 seq14654 141 1e-28 >seq3 Length=147229 Score = 172 bits (190), Expect = 7e-38 Identities = 443/673 (66%), Gaps = 4/673 (1%) Strand=Plus/Plus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 || ||||| |||||||| |||| ||| || ||| ||| | ||||| | || ||| Sbjct 143720 TCAAACTCCTCTCCCCAGACATCAGCCAAGCCGGGAGCTTCGTTGGGACAAAACAGGGAC 143779 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112 ||||| | || |||||| ||||| || || || |||| ||| || || ||| Sbjct 143780 CACTCCTGATTGCTCTCCACTCGCTTCATGAATAGGTCCGGAACCCAGAGCGCGTAAAAG 143839 Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63172 || ||||||| | | ||||| || || ||||| || || || || ||| | | | Sbjct 143840 AGGTCTCTGGCGCGCAGCTCCTCCTTGCCGTGGTTCTTCTTCAGCTCCAGAAACTCGAAA 143899 Query 63173 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63232 | || | ||||| || |||||||| | || | | |||| |||||| |||||| Sbjct 143900 ACGTCCGCGTGCCATGGCTCCAAGTAGACAGCAAAAGCTCCTTTGCGTTTGCCTCCTCCT 143959 Query 63233 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 63292 || || | |||||| || |||| ||| | || | | ||| || || | ||| || || Sbjct 143960 TGGTCGACGTATCTGGCAGTGTCGTTAAAGACGCGAAGCATCGGGATGAGACCGTTCGAC 144019 Query 63293 GTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63352 || ||||| || || ||| ||||| |||||| || | | || || Sbjct 144020 GTGCCATTAGTTCCACGGATGTAGCTGTGCGAGGCACGGATTGTGTGTACGCTGAGGCCG 144079 Query 63353 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 63412 || || || || || ||||| || |||||| | |||| || || ||||||||||| Sbjct 144080 ATGCCACCAGCGGCCTTGGAGATCAAGGCGCATTGCTTTAGGGTGTCGTAGATGCCCTCG 144139 Query 63413 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 63472 || || || ||| |||| | || | ||| ||| ||| | ||| | || || || Sbjct 144140 ATGCTGTCCTCCCTCATCGTGAGCAAAAAGCAGGAAGAGAGTTGCGGCCGCTCTGTGCCG 144199 Query 63473 GCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63532 || || || | || || | ||||||||||| | | || | |||||||| ||| Sbjct 144200 GCGTTGAAGAGAGTGGGGGTGGCGTGAGTAAAGTAGAGGTTGGACATGAGATTGTAGGTC 144259 Query 63533 TCAATAGCTGAGTCTATATC--CCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63590 ||||| || | | || || |||| ||| || || | || || ||||| | ||||| Sbjct 144260 TCAATGGCAGCAGCAATGTCTCCCAT--ATGGATGCCGATGGCAACTCGCATGATCATGT 144317 Query 63591 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63650 | ||||| || |||||||||||| | | || || | |||| | ||||| || | Sbjct 144318 GTTGAGGCCTCTCAACGATCTTGCCCTCCACCTTGAAGAGGTAGCTCCTCTCCAAGGTCT 144377 Query 63651 TAAAACCAAAATA 63663 |||| ||||| || Sbjct 144378 TAAAGCCAAAGTA 144390 >seq182 Length=84632 Score = 150 bits (166), Expect = 2e-31 Identities = 309/455 (68%), Gaps = 6/455 (1%) Strand=Plus/Minus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 |||| || ||| || || || || || | || || || || || || | |||||| Sbjct 22319 AACAGCATACAAGCAAAGTCACAATGCATGCCTTCATCCCTGCTTATGAGCTCGTTGCTG 22260 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCC 32770 || |||| || ||||| || || | || || ||||| || |||| |||| || || || Sbjct 22259 AAGCTGAGCCCAGGCATCAGCCCTCTTTTCTTCAGCCAGAAGATGG-CGCAGAAGGAGCC 22201 Query 32771 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACC--GGCG 32828 || ||||| || ||||| ||||| ||||||||||| || | | || || | | | Sbjct 22200 CGAGAAGAAGATGCCTTCCACTGCGGCAAAGGCAATGAGCCGCAGAGCAAAAGCTTGTGG 22141 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 || | | |||||| | ||||| ||||||||||| || || | ||||| ||||| Sbjct 22140 CTTT--TCTATCCAACGCAGCGCCCATTCGGCCTTCTTCTTCACGCTAGGCACCGTCTCA 22083 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 || || |||||||| | ||||| || ||||| || || || || || | || Sbjct 22082 ATGGCGTTAAAGAGCTTAGCCTTTTCTTTCACGTCTTTGACGTAGGTGTCGATGAGCAGC 22023 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 ||||| ||||| || ||||| || ||||| |||||||| ||||||||||| | ||| Sbjct 22022 GAGTACATCTCCGAGTGGATGTTCTCCATGGCGATTTGAAAGCCGTAGAAGCAACGTGCC 21963 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 33068 || | | || ||||| | || || | || | || || ||| || || || Sbjct 21962 TCCGGCAGTTGAACTTCCTTCATGAAGCGGGCAGCAAGGTTCTCCACCACGATGCCATCC 21903 Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33103 ||| || ||||| ||||| || || || ||||| Sbjct 21902 GAGGCAGCGAAAAAGGCCAACACGTGCTTGATAAA 21868 >seq14654 Length=53260 Score = 141 bits (156), Expect = 1e-28 Identities = 330/495 (67%), Gaps = 2/495 (0%) Strand=Plus/Plus Query 32718 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ATCCAGAAAA 32776 ||||| ||||| ||||| | ||| || | |||||| |||| |||||| | | ||||| || Sbjct 48244 AGTCCAGGCATAAGGCCTCTCTTCTTCAACCAAAAGATGG-CGCAAAAGGAACCAGAGAA 48302 Query 32777 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG 32836 || || || || || || || ||||| | || | | || | ||| || || | Sbjct 48303 AAAGATGCCCTCCACAGCAGCGAAGGCCACGAGCCGGTGAGCAAAGCCGTCGGGGTTTTC 48362 Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 ||||||||| ||||| || || |||||| || ||||| ||||| || || || Sbjct 48363 TATCCACTTGATGGCCCACTCAGCTTTCTTTCGGACGGTAGGCACGGTCTCGATGGCGTT 48422 Query 32897 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 32956 ||||| || || || || || || || || || |||| || ||||| Sbjct 48423 GAAGAGGCGGTCCTTCTCCAAGGGGTCCTTCACGTAGGTGTCGATCAGGAGGGAGTACAT 48482 Query 32957 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAAT 33016 ||||| || || || |||||||| || ||||| ||||||||||| | |||||||| | Sbjct 48483 CTCCGAGTGGATATTCTCAATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCGGGTAC 48542 Query 33017 CTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 33076 || || || | || || | || || || || || |||||||| ||| || Sbjct 48543 TTGCACCTCCTTCATGAAGCGGACGGCCAAGTTCTCCACAACGATTCCGTCCGAGGCGGC 48602 Query 33077 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATC 33136 ||| || |||| || || | |||||||| ||||| | || || ||||| || Sbjct 48603 AAAGAAGGCCAGGACGTGGGTGATAAAATAGCGCTCGTCCTCAGAGAGCTTCTTCCAGTC 48662 Query 33137 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 33196 ||| ||||| | | ||||| || || | ||||| || ||||| ||||| || Sbjct 48663 GGTGAGATCTTGGGCAAGGTCCACCTCCTCGGCGGTCCAGAAGCTGGCCTCGGCCTTCTT 48722 Query 33197 ATACATATTCCAGAT 33211 ||||| | |||||| Sbjct 48723 GTACATCTCCCAGAT 48737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633515578040400