Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 219 5e-52 seq14654 111 2e-19 seq490 82.4 9e-11 >seq3 Length=147229 Score = 219 bits (242), Expect = 5e-52 Identities = 1164/1826 (64%), Gaps = 61/1826 (3%) Strand=Plus/Plus Query 115560 GAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAA 115619 |||||||||||| ||||| || | |||| |||||| || || | ||||| |||| | Sbjct 142585 GAGGTAGTACATTCCCGTTTTCAATCCCTTCTTCCAAGCGTAAAAGTGCATCGAGGTGAG 142644 Query 115620 CTTGG-AGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGC 115678 ||||| | || || | || ||| | ||| | || ||| |||||||| || | Sbjct 142645 CTTGGCAAAGGAGGGGGCCTTG-ATGTGCACGTTGAAGCTCTGGCTCTGATCGATAAA-C 142702 Query 115679 GTCCC-CGATCCGCCGCCATATCAATCACATCCTTCATCTTGATT--TCCCACACAGTTC 115735 | ||| |||||||||||||| || |||| | | | || |||||||| || Sbjct 142703 GCCCCTCGATCCGCCGCCATGTCGATCAAGG--TACGTTGGGACACCTCCCACACGGTCT 142760 Query 115736 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCT---G 115792 |||| || |||||||| | || ||||| | | | ||| | |||||| | Sbjct 142761 TGTACAGCTTCTTAATGTGTTCCGGGATGCAGGCAAGGTGTTGAACAGAGCCGTTGTGAG 142820 Query 115793 CCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCA 115852 || |||| | | ||||| || ||| || || | || | || || | || Sbjct 142821 CC---ACCAGTTGGTTCTTCAGCTCGGCGCTCCACAGGCCCAAGTTTCTCAGGTCTTGCA 142877 Query 115853 CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATGTTG 115911 | ||| | ||||||| || || || || | | |||| | ||| ||||||||| Sbjct 142878 TCAAGTGGCTGTTGACAATGGTGAAGTCTCCAGCCAAGATGCGGCG-AGAGTAGATGTTG 142936 Query 115912 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 115971 | ||||| |||||||||||||||||||| || | ||| || | ||||||||||| ||| Sbjct 142937 GAGGTGTAGGGCTCAAAGCACTCATTGTTGCCGAGGATCTGCGAGGTGGAGGCTGTAGGC 142996 Query 115972 ATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCG 116031 ||||| |||| | | |||||| | || || | || | || | ||| ||| || Sbjct 142997 ATGGGAGCCACCAACAAGCTGTTCCTCAGGCCGTGCTCCTTGATCTTCTGCTTCAGGCCG 143056 Query 116032 TCCCAGTCGTAGTTGAGCTTTGT------CTCCCCCTCCCACATATCAAACTGGAGGATA 116085 ||||||| |||| ||| | | || | |||| | |||||||| | || Sbjct 143057 GCCCAGTCCCAGTTCTGCTCCGAACGAGGCACCACTCCCCAGAGGTCAAACTGCAAGAGG 143116 Query 116086 CCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT-TC 116144 |||| | || || || | | | || || ||||||||| | || |||| || Sbjct 143117 CCTTTGCTTGCAGGACTGCCAGGATAGGACTGGTAGGGGCCCTCA-CGAGCGGCAATCTC 143175 Query 116145 GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT 116204 | | || || || ||| || || |||||||| || || | | Sbjct 143176 GTTGGATGCTGTCAGCGCAGCGAAGTAAATGGTCTCAAAGATATCTCGGTTGAGGTCAGC 143235 Query 116205 GGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGAC 116264 ||||| | | || | | || ||| || | ||| || ||||| || ||||| || Sbjct 143236 AGCCTCTTGGCTCTCCCAGGGGAAACGCATCATCAAAAAGACGTCCGCAAGGCCTTGCAC 143295 Query 116265 ACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAA 116324 ||| | || || || ||||| | | || || || ||||| | |||||||| | Sbjct 143296 ACCAATTCCGATGGGACGATGACGAAGGTTCGAGTTGCGAGCCTCGACAACGGGATAGTA 143355 Query 116325 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC-ATGAAGCT 116383 || || || ||| | || || || ||||| ||||| | || | || | Sbjct 143356 GTTGACGTCAATGACCTTGTTGAGGTTGCGAGTGACGACCTTAACCACCTCGAACAAACG 143415 Query 116384 TTTCGTAATCAAAACTG-------CGA-GTCT-CTTCATTG---ACATACTTAGGAAGGG 116431 | || ||||| | | || |||| | || || ||| |||| ||||| | Sbjct 143416 GCT-GTGGTCAAATCGGGCTCGGCCGCTGTCTGCGTCGATGGACACAAACTTGGGAAGAG 143474 Query 116432 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 116491 ||| || || || || ||||||| || ||||| |||||||| || || |||| Sbjct 143475 CGAGAGAAGCGAGGTTGCACACAGCCACTTCGTCCTTGGAGGTGTACTCCATGATCTCCG 143534 Query 116492 TACACAAATT---TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTAC 116548 | || | || ||||| ||||||||| | ||||| ||| || ||||| ||| | Sbjct 143535 TGCAAAGGTTGCTTGAACG---AATGGTGCCGAGGTTCTGTTGGTTGGACTTGCGGTTGC 143591 Query 116549 ACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT 116608 ||| |||||||| |||||||| ||||| || ||||| | ||| || || || || Sbjct 143592 ACGAGTCCTTGTATAGCATATAGGGCGTGCCGGTCTCTATCTGGCTCTCCAGGATGGCGA 143651 Query 116609 TCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGT 116668 ||| | || ||| || | ||||||| ||||||| ||||| |||| Sbjct 143652 ACCAGAGCTCTTGGGCCTTAACGCTCCTCCTGGCTCGGCCCTCCTGTTCGTATCGAGTGT 143711 Query 116669 AGAGGGCCTCAAACTCTTCACCCACAG-CCTCTGAGAGCCCTGGTGCCTTATCTGGACAG 116727 |||| ||||||||||| || ||| ||| | || | | || || || | | ||||| Sbjct 143712 AGAGCGCCTCAAACTCCTCTCCC-CAGACATCAGCCAAGCCGGGAGCTTCGTTGGGACAA 143770 Query 116728 AAGAGAGACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAG 116784 || || ||||| ||| | |||| || ||||||||||| ||||| || | |||| Sbjct 143771 AACAGGGACCACTCCTGATTGCTCTCC---ACTCGCTTCATGAATAGGTCCGGAACCCAG 143827 Query 116785 AGCGCCGAGAAGAGATCCCGACAGCG-AGCTTCTTCATCCCCCTGATTGAGACGCAACTC 116843 ||||| | ||||| || | ||| ||| || || | || || || || ||| Sbjct 143828 AGCGCGTAAAAGAGGTCTCTGGCGCGCAGC-TCCTCCTTGCCGTGGTTCTTCTTCAGCTC 143886 Query 116844 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG 116903 || ||| || | | ||||||||||| || |||| ||| || || | | || ||||| Sbjct 143887 CAGAAACTCGAAAACGTCCGCGTGCCATGGCTCCAAGTAGACAGCAAAAGCTCCTTTGCG 143946 Query 116904 ---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAAT 116960 | || | |||| || || || || || ||||||| ||||||||||| || || Sbjct 143947 TTTGCCTCCTCCTTGGTCGACGTATCTGGCAGTGTCGTTAAAGACGCGAAGCATCGGGAT 144006 Query 116961 GATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTG-TTGGCTCTGACATCGT 117019 || ||| | || |||||| || || || || || || ||| | || || Sbjct 144007 GAGACCGTTCGACGTGCCATTAGTTCCACGGAT-GTAGCTGTGCGAGGCACGGATTGTGT 144065 Query 117020 GGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGC 117079 | | | | || || || || || ||| ||||| ||||| | | | || || Sbjct 144066 GTACGCTGAGGCCGATGCCACCAGCGGCCTTGGAGATCAAGGCGCATTGCTTTAGGGTGT 144125 Query 117080 CGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTG 117139 ||||||| || ||||| ||| || | | | || | |||||| || | ||| | Sbjct 144126 CGTAGATGCCCTCGATGCTGTCCTCCCTCATCGTGAGCAAAAAGCAGGAAGAGAGTTGCG 144185 Query 117140 GCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA-CATACCTTGGGAC 117198 ||| ||| || ||||||||||| || || || ||||| | || | | || |||| Sbjct 144186 GCCGCTCTGTGCCGGCGTTGAAGAGAGTGGGGGTGGCGTGAGTAAAGTAGAGGTT-GGAC 144244 Query 117199 ATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACC 117258 || || ||||||||| | | ||| | ||||||| || || || ||||| | || Sbjct 144245 ATGAGATTGTAGGTCTCAATGGCAGCAGCAATGTCTCCCATATGGATGCCGATGGCAACT 144304 Query 117259 CGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTC 117318 ||||| | ||||| ||| || | || | | | || || | | | |||||| ||| Sbjct 144305 CGCATGATCATGTGTTGAGGCCTCTCAACGATCTTGCCCTCCACCTTGAAGAGGTAGCTC 144364 Query 117319 TTCTCCAAGGTCTTGAGACCAAAATA 117344 ||||||||||||| | ||||| || Sbjct 144365 CTCTCCAAGGTCTTAAAGCCAAAGTA 144390 >seq14654 Length=53260 Score = 111 bits (122), Expect = 2e-19 Identities = 362/556 (65%), Gaps = 15/556 (3%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | |||||||| | | ||| | ||||| ||| || || || Sbjct 48190 GCAAAGTCACAGTGCATGCCCTCGTCCCTGCTGATCTGCTCATTACTGAAACAAAGTCCA 48249 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| || || | |||||||||||| || || || ||||| || |||||||| ||||| Sbjct 48250 GGCATAAGGCCTCTCTTCTTCAACCAAAAGATGGCGCAAAAGGAACCAGAGAAAAAGATG 48309 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAG-CGGGACTTTGTATCAAA 127698 ||||||||| ||||| || | || || | |||||| | |||| ||| ||| Sbjct 48310 CCCTCCACAGCAGCGAAGGCCACGAGCCGGTGAGCAAAGCCGTCGGGGTTTTCTAT---- 48365 Query 127699 CCACTTCATCGCCCACTGTGCCTT-TTTC--TCGATACATGGGACGGTCTGGATCGCTTC 127755 |||||| || ||||||| || || |||| || || || ||||||| ||| || | Sbjct 48366 CCACTTGATGGCCCACTCAGCTTTCTTTCGGACGGTA---GGCACGGTCTCGATGGCGTT 48422 Query 127756 AAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGT 127815 ||||| | ||| || | || || || | ||| | || || || || || | Sbjct 48423 GAAGAGGCGGTCCTTCTCCAAGGGGTCCTTCACGTAGGTGTCGATCAGGAGGGAGTACAT 48482 Query 127816 TTCGCCGTGGACCATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTT 127873 || ||||| | ||| ||||| |||| | ||||||| |||| || ||| | Sbjct 48483 CTCCGAGTGGATATTCTCA--ATGGCGATCTGAAAGCCGTAGAAGCAGCGAGCCTCGGGT 48540 Query 127874 ATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCA 127933 | || ||||| | || | | ||||| | ||| ||||| || || | Sbjct 48541 ACTTGCACCTCCTTCATGAAGCGGACGGCCAAGTTCTCCACAACGATTCCGTCCGAGGCG 48600 Query 127934 GCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAG 127993 ||||| || ||||||| | | || || | | || | ||| || |||||||| Sbjct 48601 GCAAAGAAGGCCAGGACGTGGGTGATAAAATAGCGCTCGTCCTCAGAGAGCTTCTTCCAG 48660 Query 127994 TCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTC 128053 ||| |||||| | | || || |||||||| || ||||| ||| | |||||| Sbjct 48661 TCGGTGAGATCTTGGGCAAGGTCCACCTCCTCGGCGGTCCAGAAGCTGGCCTCGGCCTTC 48720 Query 128054 TTATAGAGTTCCCAGA 128069 || || | ||||||| Sbjct 48721 TTGTACATCTCCCAGA 48736 >seq490 Length=6195 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/153 (73%), Gaps = 4/153 (3%) Strand=Plus/Plus Query 176827 GAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGT 176886 ||||||| | || || || | || | |||| | ||| || ||||| ||||| | | Sbjct 3817 GAGAGGGTAAACTCCATAATTGTCTCTTCCAAGAATAGAAAGCCCAGCTACTGCCAAACT 3876 Query 176887 CTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCC--CC 176944 ||| || || || |||||||||| ||||| || || || | | || | |||| || Sbjct 3877 CTTTGCCGAGTCGCCCTCCGTCAAAATGAGGGTGCA--TTGCTGCGCGTTCGGTCCTCCC 3934 Query 176945 GCCTTGTTCGCATCGTCCAACTTGGGAATACCA 176977 || ||||| |||||||||||||| ||||||||| Sbjct 3935 GCATTGTTGGCATCGTCCAACTTTGGAATACCA 3967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613394475720840