Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq14654 215 8e-51 seq3 145 1e-29 >seq14654 Length=53260 Score = 215 bits (238), Expect = 8e-51 Identities = 560/838 (67%), Gaps = 27/838 (3%) Strand=Plus/Plus Query 159651 TCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCT 159710 |||||||||||||||||||||| |||| ||| || ||||| | | || |||||| Sbjct 47918 TCTCGAAAAAGTTGGTCTTGCCTTCCAAGGAGATGAGCTCCATCCAGTCAAACGGGTTCG 47977 Query 159711 TCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGA 159770 | ||| ||| |||| | ||||| ||| |||||| | ||| |||||||| || | Sbjct 47978 TAGCGTTGTAGATCTTCTCGCAGCCGAGGGCCACCAGCAGGCGGTCCGCCACAAACTCAA 48037 Query 159771 TGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACA 159830 |||| ||||| |||| ||| || || | ||||| || || || | || || Sbjct 48038 TGTACTGGCACATGAGCTCGGCGTTCATGCCGATGAGCCTCACTGGAAGGGACTCGCTCA 48097 Query 159831 GAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATC-TGCGAGACACGTTCGTACCCC 159889 ||||||||| |||||||| || || || | | |||| || | |||| |||| Sbjct 48098 CAAACTCCTTTTCAATCTCCACTGCCTCAGCGATAATCTTGGTGGGCACG-TCGTTGGAG 48156 Query 159890 GGCTTGCCCAAAATGTGGTC--CTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 || || | || | || || | |||||||| |||||||| ||||||| |||| Sbjct 48157 GGTCTGTTC----TG-GATCATATTGTAGAGGAGGCAGGCAAAGTCACAGTGCATGCCCT 48211 Query 159948 CGTCCCGAGAGATGAACTCGTT--GGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005 |||||| ||| ||| || || | | || || ||||| | || | | || Sbjct 48212 CGTCCCTGCTGATCTGCTCATTACTGAAACAA--AGTCCAGGCATAAGGCCTCTCTTCTT 48269 Query 160006 GAGCCAAAAAATGGCCGCAAAA-GCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACG 160064 | |||||| |||| ||||||| | ||| |||||||| |||||||| || || || | Sbjct 48270 CAACCAAAAGATGG-CGCAAAAGGAACCAGAGAAAAAGATGCCCTCCACAGCAGCGAAGG 48328 Query 160065 CCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAG 160124 ||||||||| | | ||| || ||| || || | ||||| | ||||||| |||| Sbjct 48329 CCACGAGCCGGTGAGCAA---AGCCGTCGGGGTTTTCTATCCACTTGATGGCCCACTCAG 48385 Query 160125 CCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCA 160184 | |||||| || | |||| | ||||| |||||| || | | ||||| |||| Sbjct 48386 CTTTCTTTCGGACGGTAGGCACGGTCTCGATGGCGTTGAAGAGGCGGTCCTTCTCCAAGG 48445 Query 160185 CATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGG 160244 ||||| | || | ||||| |||||||| || | ||| | ||| || |||| Sbjct 48446 GGTCCTTCACGTAGGTGTCGATCAGGAGGGAGTACATCTCCGAGTGGATATTCTCAATGG 48505 Query 160245 CCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC-TGCACCTCCTGTGTGAACCTT 160303 | ||||||||| |||||| | |||| | | ||| |||||||||| |||| | Sbjct 48506 CGATCTGAAAGCCGTAGAAGCAGCGAGCCT-CGGGTACTTGCACCTCCTTCATGAAGC-- 48562 Query 160304 TGAC--CCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAG 160361 ||| ||| || | ||| | ||||| | ||| |||||||| |||| ||||| | Sbjct 48563 GGACGGCCAAGTTCTCCACAACGATTCCGTCCGAGGCGGCAAAGAAGGCCAGGACGTGGG 48622 Query 160362 AGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCA 160421 ||| |||| | |||||| | ||| ||| | ||||| || | |||||||| | Sbjct 48623 TGATAAAATAGCGCTCGTCCTCAGAGAG---CTTCTTCCAGTCGGTGAGATCTTGGGCAA 48679 Query 160422 AATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 || ||||| || ||| |||| | |||| || | |||||||| ||||||| Sbjct 48680 GGTCCACCTCCTCGGCGGTCCAGAAGCTGGCCTCGGCCTTCTTGTACATCTCCCAGAT 48737 >seq3 Length=147229 Score = 145 bits (160), Expect = 1e-29 Identities = 392/595 (66%), Gaps = 10/595 (2%) Strand=Plus/Plus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902 || || || ||||| || ||||| | ||||| || | || || |||||||| || || Sbjct 142544 TCTACAGTAAACTGGATAGCGTTGGCAGCAGGTCTCGTCCTGAGGTAGTACATTCCCGTT 142603 Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCG 203962 || | ||||||| ||| |||| | |||||| || | || ||| | | |||| | Sbjct 142604 TTCAATCCCTTCTTCCAAGCGTAAAAGTGCATCGAGGTGAGCTTGGCAAAGGAGGGGGCC 142663 Query 203963 GCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATA 204022 ||||| | ||| | |||||| || ||||| || | | | ||||| || ||||| Sbjct 142664 TTGATGTGCACGTTGAAGCTCTGGCTCTGATCGATAAACGCCCCTCGATCCGCCGCCATG 142723 Query 204023 TTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTGTGTTG 204081 | ||| | ||| || || | ||||||||| |||||| ||| | ||| | |||||| Sbjct 142724 TCGATCAAGGTACGTTGGGACACCTCCCACACGGTCTTGTACAGCTTCT-TAATGTGTTC 142782 Query 204082 AGGCACATCTTCCCACGTCCTGATC-GAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCT 204140 || | | | | || ||| | |||||||||| |||| |||| || || || Sbjct 142783 CGGGATG-CAGGCAAGGTGTTGAACAGAGCCGTTGTGAGCCACCAGTTGGTTCTTCAGCT 142841 Query 204141 CCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAA 204200 | | | ||||| |||||| | |||| || ||| || |||| ||||| || | Sbjct 142842 CGGCGCTCCACAGGCCCAAGTTTCTCAGGTCTTGCATCAAGTGGCTGTTGACAATGGTGA 142901 Query 204201 AGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGT 204260 ||||||| | || | | || | | | | |||| |||| | || || || ||| | Sbjct 142902 AGTCTCCAGCCAAGATGCGGCGAGAGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCAT 142961 Query 204261 TGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGC 204320 ||||||||| ||||| | |||| ||| || ||||||||||||| | || | ||| | Sbjct 142962 TGTTGCCGAGGATCTGCGAGGTGGAGGCTGTAGGCATGGGAGCCACCAACAAGCTGTTCC 143021 Query 204321 GCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC------GTGCATCGCAC 204374 || |||| | | || | | ||||||| || |||||| ||| || || Sbjct 143022 TCAGGCCGTGCTCCTTGATCTTCTGCTTCAGGCCGGCCCAGTCCCAGTTCTGCTCCGAAC 143081 Query 204375 TGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCC 204429 || ||| ||||| | ||| ||||| |||| ||||| || | || ||||| Sbjct 143082 GAGGCACCACTCCCCAGAGGTCAAACTGCAAGAGGCCTTTGCTTGCAGGACTGCC 143136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795009100171440