Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq201 116 3e-21 seq7184 104 2e-17 seq294 91.5 1e-13 seq11709 82.4 5e-11 >seq201 Length=21658 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| ||||||||||| || ||||| || | ||| || || || || || ||||| || Sbjct 14224 GCCACCTCGCAAACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGC 14165 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | ||| |||| |||| || || || | || || | |||||||| || | ||| Sbjct 14164 GAGAGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGG 14105 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||| ||||| || ||||| || | || | | ||||| | ||| ||||| Sbjct 14104 AATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTCTCGATGGTGTCAGAGCTCTCCAC 14045 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| ||||| || || || ||||| || || ||||||||||||||| Sbjct 14044 CTCCAAGGTAATAGTCTTGCCAGTTAAGGTCTTGACGAAGATCTGCATG 13996 >seq7184 Length=931 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || | ||| || ||||| || | |||| || ||||| || || ||||| ||| Sbjct 144 CCGCCACGAAGACGAAGGACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAATCAGCC 203 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| | || |||| || || ||| | || || | ||||||||| || | ||| Sbjct 204 AAGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGA 263 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||| || ||||| || ||||| || | || | | ||||| | ||| ||||| Sbjct 264 ATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATGGTGTCGGAGCTCTCCACT 323 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| || || || || || || | ||| || |||||||||||||| Sbjct 324 TCCAGGGTGATGGTCTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 370 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| || | |||| || || || || || || |||||| Sbjct 372 CCTCCACGGAGACGCAACACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCC 431 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| |||| || || ||| | || || | |||||||| || | ||| Sbjct 432 AAGGTACGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGA 491 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||| || ||||| ||||| || || | || | | ||||| | ||| ||||| Sbjct 492 ATGCCCTCCTTGTCCTGGATTTTCTGCTTCACGTTCTCGATGGTGTCGGAGCTCTCCACC 551 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| ||||| || || || || || || || ||||||||||||||| Sbjct 552 TCCAAGGTAATGGTCTTGCCAGTCAAGGTCTTAACGAAGATCTGCATG 599 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || | || ||||| ||||| || | |||| || || || || || || ||||| Sbjct 599 GCCTCCCCTCAGACGCAACACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 658 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| | || |||| || || || |||| || | ||||||||||| | || Sbjct 659 CAAGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCGGGAGG 718 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||| ||||| || ||||| || | | | | ||||| | | |||||| Sbjct 719 GATGCCTTCCTTGTCCTGGATCTTTTGCTTGACATTTTCAATAGTGTCAGAGGATTCCAC 778 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || || || || || | || || |||||||||||||| Sbjct 779 TTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 826 >seq294 Length=52215 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || | ||| || ||||| || | || || || || || || || |||||| Sbjct 28730 CCGCCACGAAGACGAAGGACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 28789 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| | || |||| ||| || ||| | || || | || ||||| || | || Sbjct 28790 AGGGTGCGACCGTCCTCCAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCGGGAGGG 28849 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| || || || || | || | | ||||| | ||| ||||| Sbjct 28850 ATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGGAGCTCTCCACC 28909 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| ||||| || ||||| || || || || ||||||||||||||| Sbjct 28910 TCCAAGGTAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCATG 28957 >seq11709 Length=580 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/227 (68%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||| || | || || || || || || || |||||| Sbjct 216 CCACCGCGGAGACGGAGGACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 275 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| | || |||| ||||| ||| | || || | || ||||| || | ||| Sbjct 276 AGGGTGCGACCGTCCTCCAGCTGTTTGCCGGCGAAGATCAGGCGTTGCTGGTCGG-GGGA 334 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || || ||||| || ||||| || | || | | ||||| | ||| ||||| Sbjct 335 ATACCCTCCTTGTCTTGGATCTTTTGCTTGACGTTCTCGATGGTGTCGGAGCTCTCCACC 394 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| ||||| || ||||| || || || || |||||||||||||| Sbjct 395 TCCAAGGTAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347307370798667