Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3 190 3e-43 seq14654 104 3e-17 seq182 95.1 2e-14 seq1371 84.2 3e-11 >seq3 Length=147229 Score = 190 bits (210), Expect = 3e-43 Identities = 637/979 (65%), Gaps = 27/979 (3%) Strand=Plus/Minus Query 111529 GAGACTACGACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTC--CAAAG 111586 |||||||| | | ||| ||||| | |||||| | |||| ||||||||| ||| | Sbjct 144407 GAGACTACAATTACTCTTACTTTGGCTTTAAGACCTTGGAGAGGAGCTACCTCTTCAAGG 144348 Query 111587 ACTGGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTAT 111646 |||| || | | || | || || ||||| ||||||| || || ||||| || Sbjct 144347 --TGGAGGGCAAGATCGTTGAGAGGCCTCAACACATGATCATGCGAGTTGCCATCGGCAT 144290 Query 111647 CCATGGGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATGTCC--CGTGGTATG 111704 |||| || ||| |||| | ||| | ||||| ||| | |||||| | | || Sbjct 144289 CCATATGGGAGACATTGCTGCTGCCATTGAGACCTACAATCTCATGTCCAACCTC-TACT 144231 Query 111705 TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTC---C 111761 || || |||| || || || ||||||||||| || ||| | || ||| | || | Sbjct 144230 TTACTC-ACGCCACCCCCACTCTCTTCAACGCCGGCACAGAGCGGCCGCAACTCTCTTCC 144172 Query 111762 AGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACT 111821 | | ||| || | | | | |||||| ||| | ||||| |||| ||| || | Sbjct 144171 TGCTTTTTGCTCA---CGATGAGGGAGGACAGCATCGAGGGCATCTACGACACCCTAAAG 144115 Query 111822 GAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGA 111881 |||| ||| ||||| ||| |||||||| ||||| | | | || || | Sbjct 144114 CAATGCGCCTTGATCTCCAAGGCCGCTGGTGGCATCGGCCTCAGCGTACACACAATCCGT 144055 Query 111882 GCCAA-CAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCT 111940 ||| || || || | || || ||||| || | ||| | || || ||||| Sbjct 144054 GCCTCGCACAGCTAC-ATCCGTGGAACTAATGGCACGTCGAACGGTCTCATCCCGATGCT 143996 Query 111941 TCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATC 111997 |||||| ||||||| ||| || | || || |||||| || | ||||| ||| | Sbjct 143995 TCGCGTCTTTAACGACACTGCCAGATACGTCGACCAAGGAGGAGGCAAACGCAAAGGAGC 143936 Query 111998 TATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCT 112057 | | || ||||| | ||||||||||||||||| | | ||||| || ||| || Sbjct 143935 TTTTGCTGTCTACTTGGAGCCATGGCACGCGGACGTTTTCGAGTTTCTGGAGCTGAAGAA 143876 Query 112058 CAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGA 112117 ||||| || | |||||| ||| | | || ||||| | ||| |||||| |||| || Sbjct 143875 GAACCACGGCAAGGAGGAGCTGCGCGCCAGAGACCTCTTTTACGCGCTCTGGGTTCCGGA 143816 Query 112118 TCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGC 112177 || ||||||||| |||| ||| | | | ||||| || |||||||| || | || Sbjct 143815 CCTATTCATGAAGCGAGTGGAGAGCAATCAGGAGTGGTCCCTGTTTTGTCCCAACGAAGC 143756 Query 112178 ACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGA 112237 ||||| | | |||| | ||| ||||||||||| || |||||||| ||||| | Sbjct 143755 TCCCGGCTTGGCTGATGTCTGGGGAGAGGAGTTTGAGGCGCTCTACACTCGATACGAACA 143696 Query 112238 AGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTC 112297 || | || || | || || || || | ||| || || || || Sbjct 143695 GGAGGGCCGAGCCAGGAGGAGCGTTAAGGCCCAAGAGCTCTGGTTCGCCATCCTGGAGAG 143636 Query 112298 TCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAA 112357 || | ||||| || || || |||||||| ||||| ||| | || |||| ||| || Sbjct 143635 CCAGATAGAGACCGGCACGCCCTATATGCTATACAAGGACTCGTGCAACCGCAAGTCCAA 143576 Query 112358 TCAAAAGAATTTGGGTGTGATCAAGAGTTC---CAACCTCTGTACAGAAATCTTGGAATT 112414 ||| |||| | || | || |||| |||||| || || || ||| |||| | Sbjct 143575 CCAACAGAACCTCGG---CACCATTCGTTCAAGCAACCTTTGCACGGAGATCATGGAGTA 143519 Query 112415 TACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT 112474 || ||| || || ||||||||| |||||||| || ||||||| ||||||| ||| Sbjct 143518 CACCTCCAAGGACGAAGTGGCTGTGTGCAACCTCGCTTCTCTCGCTCTTCCCAAGTTTGT 143459 Query 112475 GGATCCAGAGACAAAGACA 112493 | |||| ||| ||||| Sbjct 143458 G--TCCATCGACGCAGACA 143442 Score = 107 bits (118), Expect = 2e-18 Identities = 319/487 (66%), Gaps = 14/487 (3%) Strand=Plus/Minus Query 112851 GACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATG 112910 ||||||| || || ||| | ||||||||| | || || | ||||| | ||| || Sbjct 143064 GACTGGGCCGGCCTGAAGCAGAAGATCAAGGAGCACGGCCTGAGGAACAGCTTGTTGGTG 143005 Query 112911 GCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCC 112970 || || ||||| |||||||||||| | || ||| | || || ||||| |||||||| ||| Sbjct 143004 GCTCCCATGCCTACAGCCTCCACCTCGCAGATCCTCGGCAACAATGAGTGCTTTGAGCCC 142945 Query 112971 TACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAA 113029 ||||| | |||||||| ||| | | | | | || ||||| || |||||||||| Sbjct 142944 TACACCTCCAACATCTACTCT-CGCCGCATCTTGGCTGGAGACTTCACCATTGTCAACAG 142886 Query 113030 GCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT 113089 || | || | ||||| | | | | || || ||| | || ||||| | | | Sbjct 142885 CCACTTGATGCAAGACCTGAGAAACTTGGGCCTGTGGAGCGCCGAGCTGAAGAACCAACT 142826 Query 113090 GGTG----AAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGA 113145 |||| | | | || || ||||| | ||| || || || | ||||||| Sbjct 142825 GGTGGCTCACAAC----GGCTCTGTTCAACACCTTGCCTGCATCCCGGAACACATTAAGA 142770 Query 113146 AGTTGTACCGCACAGTTTGGGA--AATCAAGATGAAGGATGTCATTGACATGGCCGCAGA 113203 || ||||| || || ||||| || | | | || || |||||||| || || Sbjct 142769 AGCTGTACAAGACCGTGTGGGAGGTGTCCCAACGTACCTTG--ATCGACATGGCGGCGGA 142712 Query 113204 TCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGAT 113263 ||| || || || ||||| || || || | || | ||| | || | | Sbjct 142711 TCGAGGGGCGTTTATCGATCAGAGCCAGAGCTTCAACGTGCACATCAAGGCCCCCTCCTT 142652 Query 113264 GTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTA 113323 |||||||| | || |||||| | ||| |||||||||||| | |||||||| ||||| Sbjct 142651 TGCCAAGCTCACCTCGATGCACTTTTACGCTTGGAAGAAGGGATTGAAAACGGGAATGTA 142592 Query 113324 TTACCTC 113330 |||||| Sbjct 142591 CTACCTC 142585 >seq14654 Length=53260 Score = 104 bits (114), Expect = 3e-17 Identities = 177/255 (69%), Gaps = 5/255 (2%) Strand=Plus/Minus Query 102078 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGAT 102137 |||||| | | ||||| | |||||| | || || || | | ||||||||| || Sbjct 48440 GAGAAGGACCGCCTCTTCAACGCCATCGAGACCGTGCCTACCGTCCGAAAGAAAGCTGAG 48381 Query 102138 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTC-CTTTGCTGAGCGACTCTTCGCATT 102196 ||||| || |||||| ||| ||| | || ||||||| | || ||| | || || Sbjct 48380 TGGGCCATCAAGTGG----ATAGAAAACCCCGACGGCTTTGCTCACCGGCTCGTGGCCTT 48325 Query 102197 TGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAA 102256 || ||| ||||| ||||| |||||||||||||| ||||| || | |||| | ||||| Sbjct 48324 CGCTGCTGTGGAGGGCATCTTTTTCTCTGGTTCCTTTTGCGCCATCTTTTGGTTGAAGAA 48265 Query 102257 GCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACT 102316 | |||| || ||||| || || || ||| || |||| ||| | |||||||| | Sbjct 48264 GAGAGGCCTTATGCCTGGACTTTGTTTCAGTAATGAGCAGATCAGCAGGGACGAGGGCAT 48205 Query 102317 CCACCAAGAGTTTGC 102331 ||| || ||||| Sbjct 48204 GCACTGTGACTTTGC 48190 >seq182 Length=84632 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 102088 AGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGA 102147 |||||||| | ||||| | || || || | | | ||||| || || ||||| || Sbjct 22067 AGCTCTTTAACGCCATTGAGACGGTGCCTAGCGTGAAGAAGAAGGCCGAATGGGCGCTGC 22126 Query 102148 AGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTG 102207 ||| | || |||| | | | |||||| ||| ||| | || ||||| || | Sbjct 22127 GTTGGATAGA---AAAGCCACAAGCTTTTGCTCTGCGGCTCATTGCCTTTGCCGCAGTGG 22183 Query 102208 AGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCA 102267 | || ||||||||||| || ||||||||||| || | ||||| ||||| |||| || | Sbjct 22184 AAGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTGAAGAAAAGAGGGCTGA 22243 Query 102268 TGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298 |||| || ||| ||||| ||||||||| || Sbjct 22244 TGCCTGGGCTCAGCTTCAGCAACGAGCTCAT 22274 >seq1371 Length=2279 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/198 (70%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 16055 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 16114 ||| |||||| |||||||| || |||||||||||| || ||| | ||| || | Sbjct 694 CTTGCCCACGCTGTCAATCTCGTCGATGAAGACGATGGCGGGGGCATTCTTGCGCGCCTC 635 Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA---GTT 16171 ||||| || | || | |||||||| || || || |||||||||||| |||| | | Sbjct 634 CTCAAAAAGGTTACGAATGCGCTTGGCTCCTACGCCTACAAACATCTCCTCAAACTCGCT 575 Query 16172 TGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 16231 || | || | | || |||||| || || | || || |||| |||| |||||| | Sbjct 574 AGCAGAGGCAAA---GAAGAAGGGCACGTTGGCCTCTCCGGCAACGGCTTTGGCGAGCAA 518 Query 16232 AGTCTTACCCGTACCTGG 16249 || || || || ||||| Sbjct 517 GGTTTTGCCGGTGCCTGG 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620628346343280