Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq182 89.7 6e-13 seq3 84.2 2e-11 >seq182 Length=84632 Score = 89.7 bits (98), Expect = 6e-13 Identities = 242/366 (66%), Gaps = 11/366 (3%) Strand=Plus/Minus Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 |||| || ||| ||||| |||||||| | || || || || ||||| | || || Sbjct 22319 AACAGCATACAAGCAAAGTCACAATGCATGCCTTCATCCCTGCTTATGAGCTCGTTGCTG 22260 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCC 19070 || | | ||||||||||| |||||||| || | |||||| || | ||| || || || Sbjct 22259 AAGCTGAGCCCAGGCATCAGCCCTCTTTTCTTCAGCCAGAAGAT-GGCGCAGAAGGAGCC 22201 Query 19071 AGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATC 19130 || ||||| || ||||| ||||| ||||| |||| || | || | ||| | Sbjct 22200 CGAGAAGAAGATGCCTTCCACTGCGGCAAAGGCAATGAGCCGCAGAGCAAA---AGCTTG 22144 Query 19131 ATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTC 19190 || | ||||| ||| ||||| || |||||||| || || | |||| ||||| Sbjct 22143 TGGCTTTTCTATCCAACGCAGCGCCCATTCGGCCTTCTTCTTCACGCTAGGCACCGTCTC 22084 Query 19191 TATAGAATTAAATAGATACATACGCTCATCTGT---ATCTTTAACATATGCATCTATCAA 19247 || | ||||| || | || || ||| | ||||| || || | || || | Sbjct 22083 AATGGCGTTAAAGAG---CTTAGCCTTTTCTTTCACGTCTTTGACGTAGGTGTCGATGAG 22027 Query 19248 TAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCT 19307 | |||||| || || || || || || || || || ||||| ||||| || || | Sbjct 22026 CAGCGAGTACATCTCCGAGTGGATGTTCTCCATGGCGATTTGAAAGCCGTAGAAGCAACG 21967 Query 19308 TGCTTC 19313 ||| || Sbjct 21966 TGCCTC 21961 >seq3 Length=147229 Score = 84.2 bits (92), Expect = 2e-11 Identities = 223/341 (65%), Gaps = 0/341 (0%) Strand=Plus/Plus Query 48099 TCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCA 48158 || ||||||||| ||| || | | |||||| || || || | |||| | | || || Sbjct 143693 TCCTGTTCGTATCGAGTGTAGAGCGCCTCAAACTCCTCTCCCCAGACATCAGCCAAGCCG 143752 Query 48159 GGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAAT 48218 ||| ||| || ||||| | || ||||| |||| || | | |||| |||| ||| Sbjct 143753 GGAGCTTCGTTGGGACAAAACAGGGACCACTCCTGATTGCTCTCCACTCGCTTCATGAAT 143812 Query 48219 ATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTA 48278 | || || | ||| || || ||| | || || | | || || || ||||| Sbjct 143813 AGGTCCGGAACCCAGAGCGCGTAAAAGAGGTCTCTGGCGCGCAGCTCCTCCTTGCCGTGG 143872 Query 48279 TTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCC 48338 ||| | || || || ||||| || | | || || |||||||| || || || | || Sbjct 143873 TTCTTCTTCAGCTCCAGAAACTCGAAAACGTCCGCGTGCCATGGCTCCAAGTAGACAGCA 143932 Query 48339 ATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACT 48398 | | ||| ||||| |||||||| || | ||||||||||| | |||| | || Sbjct 143933 AAAGCTCCTTTGCGTTTGCCTCCTCCTTGGTCGACGTATCTGGCAGTGTCGTTAAAGACG 143992 Query 48399 CTTAACATTGGGACAATACCATTTGATATACCATTGGTTCC 48439 | | ||| |||| | ||| || || | ||||| ||||| Sbjct 143993 CGAAGCATCGGGATGAGACCGTTCGACGTGCCATTAGTTCC 144033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562005519534360