Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq378 96.9 3e-14 seq294 89.7 4e-12 seq128 86.0 5e-11 >seq378 Length=27260 Score = 96.9 bits (106), Expect = 3e-14 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || || || || || || ||||| || || || || ||||||||| Sbjct 26656 GCCGTCATCACGGTGCCTGCCTACTTCAACGACTCGCAGCGAGTGGCCACGAAAGATGCT 26597 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || ||| |||||||| |||| ||||||| ||||| ||||||||||| ||||| || Sbjct 26596 GGCGCTATCGCTGGACTGGATGTCATTCGTATCATCAACGAACCTACTGCCGCTGCCATT 26537 Query 550520 GCATATGGACTTGATAAA 550537 || ||||| ||||| ||| Sbjct 26536 GCCTATGGCCTTGAGAAA 26519 >seq294 Length=52215 Score = 89.7 bits (98), Expect = 4e-12 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| ||||| || || || || ||||| || || ||||||||||||||| || || Sbjct 28963 CCTCAGACGAAGGACGAGGTGGAGGGTGGACTCCTTCTGAATATTGTAATCAGCGAGGGT 29022 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | || || ||||| || ||||| || || | | ||||| ||||| ||||| || Sbjct 29023 ACGGCCGTCCTCCAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATACC 29082 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGA 563431 || || || || || || || || || ||| || || || | | || | || ||||| Sbjct 29083 CTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAG-GACTCCACTTCGA 29141 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || | || || || || || || || |||||||||||||| Sbjct 29142 GGGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAAATTTGCAT 29184 >seq128 Length=25026 Score = 86.0 bits (94), Expect = 5e-11 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 1003428 GTTGATGAAAATGATAATGTTAAAGTAGCTGATTTTGGCTTTGCGCGCATCAAACAAGAA 1003487 ||||| ||||| || || ||| |||| || ||||| ||||| || ||| | ||||| Sbjct 3874 GTTGACGAAAACTGGAACGTAAAAATAGCAGACTTTGGTTTTGCTCGTATCCGAGAAGAA 3815 Query 1003488 AATGCAACAATGACTCGCTGTGGTACTCCGTGTTGGACAG 1003527 || ||||||||||| || ||||| ||||| |||||||||| Sbjct 3814 AACGCAACAATGACACGTTGTGGCACTCCTTGTTGGACAG 3775 Score = 86.0 bits (94), Expect = 5e-11 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 1003068 TATGGATTAGTTTATCAAGGCGAA-TGGAAAGGAATAAATGTTGCTGTTAAAAAATTCGT 1003126 |||||| | || || ||||||||| ||||||||| | | ||||| || || || ||| | Sbjct 4310 TATGGAATCGTCTA-CAAGGCGAAATGGAAAGGAGTGGACGTTGCCGTAAAGAAGTTCAT 4252 Query 1003127 CAAACAAAAACTAGATGAGAACCAAATGCTAGAATTTAGAGCTGAAATGGCATTTTTGAG 1003186 ||| || || || ||||| | |||| | || || | ||||||||||| || | || Sbjct 4251 CAAGCAGAAGCTCTCCGAGAAACGAATGTTGGAGTTCCGTGCTGAAATGGCTTTCCTCAG 4192 Query 1003187 TCAATTACAACATCCAAATATTGTTATGTTTATTGG 1003222 | | || ||||| || |||||| |||||||||| Sbjct 4191 CGAGCTTCACCATCCCAACATTGTTCTGTTTATTGG 4156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028518650587510