Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3 288 2e-72 seq14654 230 4e-55 seq182 143 5e-29 >seq3 Length=147229 Score = 288 bits (318), Expect = 2e-72 Identities = 736/1102 (67%), Gaps = 49/1102 (4%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTG-TTGAGT--------CTCTTG 221467 ||||| |||||| ||| |||||||||||||| |||| | ||||| |||||| Sbjct 143186 GTCAGCGCAGCGAAGTAAATGGTCTCAAAGAT-ATCTCGGTTGAGGTCAGCAGCCTCTTG 143244 Query 221468 GC-CTCGGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTAC 221526 || ||| |||| | ||||| |||| ||||||||| || || || || || Sbjct 143245 GCTCTCCC---------AGGGGAAACGCATCATCAAAAAGACGTCCGCAAGGCCTTGCAC 143295 Query 221527 TCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAA 221586 || || |||||||| | || | ||| || | || || |||||||| | Sbjct 143296 ACCAATTCCGATGGGACGATGACGAAGGTTCGAGTTGCGAGCCTCGACAACGGGATAGTA 143355 Query 221587 GTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTC-AGCT 221645 ||||||||| || | ||||||||||| |||||| ||| |||||||||||| | | | Sbjct 143356 GTTGACGTCAATGACCTTGTTGAGGTTGCGAGTGACGACCTTAACCACCTCGAACAAACG 143415 Query 221646 TCTGGTGATTGAACACCAACTC-GCCGCCGT---CGTGGAGGGGTTCCACAAAAGCGTTT 221701 || ||| | || | ||| ||||| || ||| || || |||||| | Sbjct 143416 GCT-GTG-GTCAAATCGGGCTCGGCCGCTGTCTGCGTCGATGG---ACACAAACTTGGGA 143470 Query 221702 AGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATC 221761 || || | || ||||| ||||| ||||| ||||||||| ||| |||| |||||| Sbjct 143471 AGAGCGAGAGAAGCGAGGTTGCACACAGCCACTTCGTCCTTGGAGGTGTACTCCATGATC 143530 Query 221762 TCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTG 221821 || || || |||||||| | ||||| || |||| | || || |||||||| ||| Sbjct 143531 TCCGTGCAAAGGTTGCTTGAACGAATGGTGCCGAGGTTCTGTTGGTTGGACTTGCGGTTG 143590 Query 221822 GCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTG 221881 | ||||||||| |||||| |||| ||| ||||| | ||| | |||| || | Sbjct 143591 CACGAGTCCTTGTATAGCATATAGGGCGTGCCGGTCTCTATCTGGCTCTCCAGGATGGCG 143650 Query 221882 TCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCG 221941 |||||| ||| ||| | || ||||| || || ||||| || ||| || | Sbjct 143651 AACCAGAGCTCTTGGGCCTTAACGCTCCTCCTGGCTCGGCCCTC---CTGTTCGTATCGA 143707 Query 221942 GTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGA 222001 || |||||| ||||||| || || | | || ||| ||| ||| | |||| Sbjct 143708 GTGTAGAGCGCCTCAAACTCCTCTCCCCAGACATCAGCCAAGCCGGGAGCTTCGTTGGGA 143767 Query 222002 CACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCAC 222061 || | ||| ||| | || ||| | || | || |||||| |||||||| | ||| Sbjct 143768 CAAAACAGGGACCACTCCTGATTGCTCTCCACTCGCTTCATGAATAGGTCCGGAACCCAG 143827 Query 222062 AGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCC 222121 ||||| | |||||| ||||||| ||| |||||||| ||||| ||| ||| |||| ||| Sbjct 143828 AGCGCGTAAAAGAGGTCTCTGGCGCGCAGCTCCTCCTTGCCGTGGTTCTTCTTCAGCTCC 143887 Query 222122 AAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGC 222181 | |||||| |||| ||| |||||||| ||||||| ||||| || | ||| || || Sbjct 143888 AGAAACTCGAAAACGTCCGCGTGCCATGGCTCCAAGTAGACAGCAAAAGCTCCTTTGCGT 143947 Query 222182 TTGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTAC 222240 ||| || || || || || || ||| | |||| |||| |||||| |||| | Sbjct 143948 TTGCCTCCTCCTTGGTCGACGTATCT-GGCAGTGTCGTTAAAGACGCGAAGCATCGGGAT 144006 Query 222241 CAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGC-CGGCCCTCAGGTTAC 222299 || ||||| || || || || || ||||| || || ||| | || | Sbjct 144007 GAGACCGTTCGACGTGCCATTAGTTCCACGGATGTA-GCTGTGCGAGGCAC---GGATTG 144062 Query 222300 TG-GCAGAC--ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAG 222356 || | | | | |||||| ||||| ||| || ||||||| |||||| ||| || | Sbjct 144063 TGTGTACGCTGAGGCCGATGCCACCAGCGGCCTTGGAGATCAAGGCGCATTGCTTTAGGG 144122 Query 222357 TGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCT 222416 |||| ||||||||| || ||||||| | | | |||| ||| || || || | | Sbjct 144123 TGTCGTAGATGCCCTCGATGCTGTCCTCCCTCATCGTGAGCAAAAAGCAGGAAGAGAGTT 144182 Query 222417 GAG---ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCC 222473 | | | ||| | |||||| || || ||||| ||||||| ||||||||| Sbjct 144183 GCGGCCGCTCTGTG---CCGGCGTTGAAGAGAGTGGGGGTGGCGTGAGTAAAGTAGAGGT 144239 Query 222474 TAGACATCAGATCGTACGTCTC 222495 | ||||| |||| ||| ||||| Sbjct 144240 TGGACATGAGATTGTAGGTCTC 144261 >seq14654 Length=53260 Score = 230 bits (254), Expect = 4e-55 Identities = 571/858 (67%), Gaps = 36/858 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | | |||||||||||| ||| | || || Sbjct 48737 ATCTGGGAGATGTACAAGAAGGCCGAGGCCAGCTTCTGGACCGCCGAGGAGGTGGACCTT 48678 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 ||| | || | || |||| | || || | ||||||| ||||| ||| || Sbjct 48677 GCCCAAGATCTCACCGACTGGAAGAAGCTCTCTGAGGACGAGCGCTATTTTATCACCCAC 48618 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || |||| |||||||| ||||| || || || || ||||| || || | ||| Sbjct 48617 GTCCTGGCCTTCTTTGCCGCCTCGGACGGAATCGTTGTGGAGAACTTGGCCGTCCGCTTC 48558 Query 25657 ACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715 | | ||| ||||| |||| | |||| || |||||||| || ||||| ||||| || Sbjct 48557 ATGAAGGAGGTGCAAGTACCCG-AGGCTCGCTGCTTCTACGGCTTTCAGATCGCCATTGA 48499 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGC 25772 ||| | ||||| ||| |||| || || ||||| || ||| | | ||| | Sbjct 48498 GAATATCCACTCGGAGATGTACTCC---CTCCTGATCGACACCTACGTGAAGGACCCCTT 48442 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 |||| || || || || ||||||||| | | || | | || | ||| || Sbjct 48441 GGAGAAGGACCGCCTCTTCAACGCCATCGAGACCGTGCCTACCGTCCGAAAGAAAGCTGA 48382 Query 25833 GTGGGCCATGAAGTGGATC-AACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||||||| |||||||| || | || || ||| ||| | ||||| || |||| Sbjct 48381 GTGGGCCATCAAGTGGATAGAAAACCCCGACGGCT----TTGCTCACCGGCTCGTGGCCT 48326 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGC 25951 | |||||||||||||||||||||||| ||||| ||| |||||||| ||| | ||| Sbjct 48325 TCGCTGCTGTGGAGGGCATCTTTTTCTCTGGTTCCTTTTGCGCCATCTTTTGGTTGAAGA 48266 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 ||| || ||||| || || | || || |||| ||||||||||||||||| Sbjct 48265 AGAGAGGCCTTATGCCTGGACTTTGTTTCAGTAATGAGCAGATCAGCAGGGACGAGGGCA 48206 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC---ACAAACCTTCTC 26068 | ||| | || ||||||||||| ||||||| | || ||| ||| ||| ||| Sbjct 48205 TGCACTGTGACTTTGCCTGCCTCCTCTACA------ATATGATCCAGAACAGACC--CTC 48154 Query 26069 AAGAGAC-CGTCTA-CAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126 | ||| | | | || || ||| ||||| |||||||| || ||||||||| Sbjct 48153 CAACGACGTGCCCACCAAGATTATCGCTGAGGCAGTGGAGATTGAAAAGGAGTTTGTGAG 48094 Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186 | ||||||||| | |||||| |||| |||||||| Sbjct 48093 CGAGTCCCTTCCAGTGAGGCTCATCGGCATGAACGCCGAGCTCATGTGCCAGTACATTGA 48034 Query 26187 GTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACAGTACGC- 26242 || |||||| |||| ||||| ||| | || || || || ||| |||||| |||| Sbjct 48033 GTTTGTGGCGGACCGCCTGCTGGTGGC-CCTCGG-CT-GCGAGAAGATCTACA--ACGCT 47979 Query 26243 -CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAA 26301 | |||||||| |||| ||||| ||| || |||||||| ||||||||||| || || Sbjct 47978 ACGAACCCGTTTGACTGGATGGAGCTCATCTCCTTGGAAGGCAAGACCAACTTTTTCGAG 47919 Query 26302 AAGAGGGTCGGCGACTAT 26319 | | | || || || ||| Sbjct 47918 AGGCGCGTGGGAGAGTAT 47901 >seq182 Length=84632 Score = 143 bits (158), Expect = 5e-29 Identities = 371/555 (67%), Gaps = 18/555 (3%) Strand=Plus/Plus Query 25573 GACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTG 25632 ||||| | || ||| ||||| |||||||||| || || || ||||| ||||| || ||| Sbjct 21856 GACGAACGCCACTTTATCAAGCACGTGTTGGCCTTTTTCGCTGCCTCGGATGGCATCGTG 21915 Query 25633 AACGAGAATCTGTGC-GAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTT 25691 ||||| || ||| | | |||| | |||||| || |||||| || || Sbjct 21916 GTGGAGAACCT-TGCTGCCCGCTTCATGAAGGAAGTTCAACTGCCGGAGGCACGTTGCTT 21974 Query 25692 CTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT 25751 |||||| || || || ||||| || || | ||||| ||| |||| | ||| || || Sbjct 21975 CTACGGCTTTCAAATCGCCATGGAGAACATCCACTCGGAGATGTACTC---GCTGCTCAT 22031 Query 25752 G---ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACAT 25808 || ||| | | |||||| || | | | ||| ||| ||||| ||| | Sbjct 22032 CGACACCTACGTCAAAGACGTGAAAGAAAAGGCTAAGCTCTTTAACGCCATTGAGACGGT 22091 Query 25809 ACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATC-AACAGCCAGAGCGCTA 25867 || ||| | |||| |||||| ||||| || ||||| || ||||| | ||| Sbjct 22092 GCCTAGCGTGAAGAAGAAGGCCGAATGGGCGCTGCGTTGGATAGAAAAGCCACAA-GCT- 22149 Query 25868 CGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGT 25927 |||| |||||| | |||||||| || ||||| |||||||| ||| || || | Sbjct 22150 --TTTGCTCTGCGGCTCATTGCCTTTGCCGCAGTGGAAGGCATCTTCTTCTCGGGCTCCT 22207 Query 25928 T-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAAC 25986 | |||| ||||||||||||| ||| | | ||| ||||| ||||| ||| |||| Sbjct 22208 TCTGCG-CCATCTTCTGGCTGAAGAAAAGAGGGCTGATGCCTGGGCTCAGCTTCAGCAAC 22266 Query 25987 GAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGC 26046 |||||||| |||||||| || || | || | || ||||| || |||| | | ||| Sbjct 22267 GAGCTCATAAGCAGGGATGAAGGCATGCATTGTGACTTTGCTTGTATGCTGTTC---GGC 22323 Query 26047 CACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAG 26106 || ||||||| | | |||| | || | ||||| || ||||| || Sbjct 22324 ATGTTAAGGGACAAACCGCCCGAGGAGATCATCCGTCGGATCATTGCGGAAGCTGTTGAC 22383 Query 26107 ATCGAGAAGGAGTTT 26121 ||||||||||||||| Sbjct 22384 ATCGAGAAGGAGTTT 22398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928674136378560