Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq7184 113 3e-19 seq5330 93.3 3e-13 seq1590 93.3 3e-13 seq201 91.5 1e-12 >seq7184 Length=931 Score = 113 bits (124), Expect = 3e-19 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||| |||||||| || || || || ||||| ||||| || ||||||||| Sbjct 672 TCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCGGGAGGGATGCCTTCCTTG 731 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || || |||||||| |||||| ||||||||| |||| | | ||| | ||| || Sbjct 732 TCCTGGATCTTTTGCTTGACATTTTCAATAGTGTCAGAGGATTCCACTTCCAAGGTGATG 791 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || |||||||| ||||| ||||| || || Sbjct 792 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTG 823 >seq5330 Length=1214 Score = 93.3 bits (102), Expect = 3e-13 Identities = 129/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 ||| |||||||||||||| | || || || ||||| || || | || || ||||| Sbjct 688 ATTGTAATCAGCTAGAGTGTGGCCGTCCTCCAGCTGCTTGCCCGCGGAGATCAGTCGTTG 747 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 |||| ||||| || || ||||||||||| |||||||| || || || |||||||| Sbjct 748 CTGATTGGGAGGGATGCCCTCCTTGTCTTGGATCTTTTGCTTCACGTTCTCGATAGTATC 807 Query 480713 AG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | ||||| || || || || || ||||| ||||| ||||||||||| Sbjct 808 GGAAGACTCGA-CCTCAAGAGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAAATTTG 864 >seq1590 Length=2191 Score = 93.3 bits (102), Expect = 3e-13 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || ||||||||||| || || || || ||||| || || ||||| || ||||||||| Sbjct 187 TCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGTTGCTGGTCGGGAGGGATGCCTTCCTTG 246 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 || || ||||| || ||||| || || || || | || | | ||| |||||||| Sbjct 247 TCCTGGATCTTCTGCTTGACGTTCTCGATGGTGTCGGATGACTCCA-CTTCGAGGGTAAT 305 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| ||||| |||||||||| Sbjct 306 GGTCTTTCCCGTGAGGGTCTTCTCGAAAATTTG 338 >seq201 Length=21658 Score = 91.5 bits (100), Expect = 1e-12 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 ||||| ||||| || || || || || || || |||||||| ||||||||||| || ||| Sbjct 13914 TGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATC 13855 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 || || ||||| || || || || | | | | | ||| ||||||||||| || || Sbjct 13854 TTCTGCTTGACGTTCTCGATGGTGTCGGAGCTCTCCA-CTTCCAGGGTAATAGTCTTGCC 13796 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 ||| |||||||| ||||| || || Sbjct 13795 GGTAAGAGTCTTGACGAAGATCTG 13772 Score = 91.5 bits (100), Expect = 1e-12 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || |||||||| ||||| | | ||| || || ||||| || || || || || || || Sbjct 14175 TTGTAATCAGCGAGAGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGC 14116 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || ||||| ||||||||||| || |||||||| ||||| || || || ||| Sbjct 14115 TGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTCTCGATGGTGTCA 14056 Query 480714 GTG-TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | | | ||| ||||||||| || || || | ||||| ||||| || || Sbjct 14055 GAGCTCTCCACCTCCAA-GGTAATAGTCTTGCCAGTTAAGGTCTTGACGAAGATCTG 14000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267548688570452