Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq740 127 2e-23 seq128 102 6e-16 >seq740 Length=7008 Score = 127 bits (140), Expect = 2e-23 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 282327 CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCA 282386 ||| ||| || | ||| |||||||| | ||||||||| |||||||| || ||||| || Sbjct 5927 CTTCGTTCTTGTTAAGGCCATACGCCAGAGCAGCAGCCGTTGGTTCGTTGATAATCCTTT 5868 Query 282387 AAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAA 282446 ||| | |||||||||||| |||| ||||| ||||||||||| ||||| || || || | Sbjct 5867 CAACCTGAAGACCAGCAATCTTTCCGGCATCCTTAGTGGCTTGCCTTTGCGAGTCATTGA 5808 Query 282447 AATATGCAGGAACAGTAATAACGGC 282471 | || ||||||||||| || || || Sbjct 5807 AGTAGGCAGGAACAGTGATCACAGC 5783 >seq128 Length=25026 Score = 102 bits (112), Expect = 6e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 1047969 GTCCAACAAGGAGTACCACAACGAGTCATGATGGCGTTCTCTTCTTTGATGCGAGCAAAT 1048028 |||||||||||||| |||||||| ||||| | ||||| |||||| ||| |||||||| Sbjct 3777 GTCCAACAAGGAGTGCCACAACGTGTCATTGTTGCGTTTTCTTCTCGGATACGAGCAAAA 3836 Query 1048029 CCAAAATCGGCAATTTTGACATTCCAATTTTCATCGATGAGAATATTTGATGGCTTAATG 1048088 ||||| || || ||||| || ||||| ||||| || | | || || || ||| | | Sbjct 3837 CCAAAGTCTGCTATTTTTACGTTCCAGTTTTCGTCAACTAAAAGGTTGGAGCTCTTCAAG 3896 Query 1048089 TCACGATGAATAAT 1048102 |||||||| || || Sbjct 3897 TCACGATGGATGAT 3910 Score = 100 bits (110), Expect = 2e-15 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 1061614 GTCCAACAAGGAGTTCCACAACGTGTCATTACGGAATTTTCCTCTTTGATACGTGCAAAT 1061673 |||||||||||||| ||||||||||||||| | ||||| ||| |||||| ||||| Sbjct 3777 GTCCAACAAGGAGTGCCACAACGTGTCATTGTTGCGTTTTCTTCTCGGATACGAGCAAAA 3836 Query 1061674 CCAAAATCAGCAATTTTCACATTCATACTATCATCAACTAGAATATTGGATGGTTTAATG 1061733 ||||| || || ||||| || ||| | || ||||||| || ||||| || | | Sbjct 3837 CCAAAGTCTGCTATTTTTACGTTCCAGTTTTCGTCAACTAAAAGGTTGGAGCTCTTCAAG 3896 Query 1061734 TCACGATGAATAATAATTGGATC 1061756 |||||||| || ||||| || || Sbjct 3897 TCACGATGGATGATAATAGGTTC 3919 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 1038122 GTCCAACAAGGAGTACCACAACGAGTCATTGTGGTATTGTCTTCTTTGATACGAGCAAAT 1038181 |||||||||||||| |||||||| |||||||| | || |||||| |||||||||||| Sbjct 3777 GTCCAACAAGGAGTGCCACAACGTGTCATTGTTGCGTTTTCTTCTCGGATACGAGCAAAA 3836 Query 1038182 CCAAAATCGGCAATTTTGACATTGAAATGTTCATCAACAAGAATGTTTGCTGGCTTAATG 1038241 ||||| || || ||||| || || | | ||| ||||| | || ||| | ||| | | Sbjct 3837 CCAAAGTCTGCTATTTTTACGTTCCAGTTTTCGTCAACTAAAAGGTTGGAGCTCTTCAAG 3896 Query 1038242 TCTCGATG 1038249 || ||||| Sbjct 3897 TCACGATG 3904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739908741217974