Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq7184 143 5e-29 seq104 129 1e-24 seq629 100 6e-16 seq6154 89.7 1e-12 >seq7184 Length=931 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| ||||| || ||||| ||||| || || ||||| || || || || | Sbjct 600 CCTCCCCTCAGACGCAACACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCC 659 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||||| || || || || ||||||||||| || | || ||||| ||||| Sbjct 660 AAGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCGGGAGGG 719 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || |||||| || ||||||||||| || ||| | ||| ||| Sbjct 720 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACATTTTCAATAGTGTCAGAGGATTCCACT 779 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| || | ||||| || || |||||||| Sbjct 780 TCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 826 >seq104 Length=38954 Score = 129 bits (142), Expect = 1e-24 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | ||| ||||| ||||| ||||| || || ||||| || || || || | Sbjct 25971 CCTCCCCTAAGACGAAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCC 26030 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || || ||||| ||||| | | || || || ||||| Sbjct 26031 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGAGGA 26090 Query 82704 ATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||||||||| ||||| ||| ||||| ||||| || || ||| || || || Sbjct 26091 ATGCCTTCCTTATCTTGGATCTTCTGC-TTTACGTTTTCGATGGTGTCAGAAGACTCGAC 26149 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||| || ||||| ||||| || || |||||||| Sbjct 26150 CTCAAGAGTGATGGTCTTTCCAGTCAAGGTCTTGACGAAGATCTGCAT 26197 >seq629 Length=7623 Score = 100 bits (110), Expect = 6e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || ||||| || || || || ||||| || || || || | || | | || Sbjct 4180 ACGCAAGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCC 4121 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || || || ||||| | | || || || || || || || ||||| Sbjct 4120 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGGGGAATACCCTCCTT 4061 Query 82715 ATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 || |||||||| ||||| ||||||||||| || ||| | ||| || |||| || | Sbjct 4060 GTCCTGAATCTTCTGCTTG-ACATTTTCAATGGTGTCAGAGGATTCCACCTCCAGGGTGA 4002 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| || | ||||| || || |||||||| Sbjct 4001 TGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 3965 >seq6154 Length=1076 Score = 89.7 bits (98), Expect = 1e-12 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || || || ||||| || |||||||| ||||| |||||| ||| || |||||||| || Sbjct 1062 TGCTGGTCGGGAGGAATGCCTTCCTTGTCTTGGATCTTTTGTTTCACGTTTTCAATGGTG 1003 Query 82749 TCATTAGGT-TCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807 || || | || ||||||| || || || ||||| ||||||||||| || || ||||| Sbjct 1002 TCGG-AGCTCTCCACTTCCAGGGTGATGGTTTTGCCAGTCAACGTCTTGACGAAGATCTG 944 Query 82808 CAT 82810 ||| Sbjct 943 CAT 941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981642291562961