Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq182 161 1e-34 seq3 132 7e-26 >seq182 Length=84632 Score = 161 bits (178), Expect = 1e-34 Identities = 333/482 (69%), Gaps = 10/482 (2%) Strand=Plus/Minus Query 39490 ATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTAC 39549 |||||| || |||||| ||| || |||| ||| | | |||||| || |||||||| || Sbjct 22437 ATTCATGCCGATGAGTCGAACAGGAAGAGACTCGGAAACAAACTCCTTCTCGATGTCAAC 22378 Query 39550 GGCCTCTGTTATTATC-GATGTTACTACCTCATCACTCGGTGGATGCAATAA-ATGTTTA 39607 || || | || ||| || | | | ||| || |||| | | ||| ||| | Sbjct 22377 AGCTTCCGCAATGATCCGACGG-ATGATCTCCTCGGGCGGTTTGTCCCTTAACATGCCGA 22319 Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 | || | || || ||||||||||| | ||| ||||| || || || | ||||| Sbjct 22318 A-CAGCATACAAGCAAAGTCACAATGCATGCCTTCATCCCTGCTTATGAGCTCGTTGCTG 22260 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCC 39726 || |||| |||||||| || || | || || ||||| || ||||| ||| ||| | || Sbjct 22259 AAGCTGAGCCCAGGCATCAGCCCTCTTTTCTTCAGCCAGAAGATGGC-GCAGAAGGAGCC 22201 Query 39727 AGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA-CTTGTAT 39785 || |||||||||||||| ||||| ||||| |||| || | | | || ||||| Sbjct 22200 CGAGAAGAAGATGCCTTCCACTGCGGCAAAGGCAATGAGCCGCAGAGCAAAAGCTTGTGG 22141 Query 39786 CATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTA 39845 | || | |||||| | | ||||| || || |||||||| || | ||||| || || | Sbjct 22140 C-TTTTCTATCCAACGCAGCGCCCATTCGGCCTTCTTCTTCACGCTAGGCACCGTCTCAA 22082 Query 39846 TAGCATTAAAGAGATAATGTTTTTC-ATCACTATCTTTAACATATGTATCTATTAACAGA 39904 | || |||||||| | | ||||| |||| ||||| || || || || || | ||| Sbjct 22081 TGGCGTTAAAGAGCTTAGCCTTTTCTTTCAC-GTCTTTGACGTAGGTGTCGATGAGCAGC 22023 Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964 ||||| || || |||||||| || || || || ||||| ||||| || || | ||| Sbjct 22022 GAGTACATCTCCGAGTGGATGTTCTCCATGGCGATTTGAAAGCCGTAGAAGCAACGTGCC 21963 Query 39965 TC 39966 || Sbjct 21962 TC 21961 >seq3 Length=147229 Score = 132 bits (146), Expect = 7e-26 Identities = 235/343 (69%), Gaps = 0/343 (0%) Strand=Plus/Plus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 ||| | ||| ||| | || || ||| || || || |||||||| |||||| |||| || Sbjct 143692 CTCCTGTTCGTATCGAGTGTAGAGCGCCTCAAACTCCTCTCCCCAGACATCAGCCAAGCC 143751 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 ||| ||| || ||||| | || |||||| | | || || ||||| ||||| || Sbjct 143752 GGGAGCTTCGTTGGGACAAAACAGGGACCACTCCTGATTGCTCTCCACTCGCTTCATGAA 143811 Query 69609 TAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668 ||| || |||| ||| || || |||||| ||||||| | || || || || Sbjct 143812 TAGGTCCGGAACCCAGAGCGCGTAAAAGAGGTCTCTGGCGCGCAGCTCCTCCTTGCCGTG 143871 Query 69669 AttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 69728 || || || || || |||||||| | || || | |||||||| || | || | || Sbjct 143872 GTTCTTCTTCAGCTCCAGAAACTCGAAAACGTCCGCGTGCCATGGCTCCAAGTAGACAGC 143931 Query 69729 CATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGAC 69788 | |||| ||||| |||||| || || | |||||||||||||| ||| |||| Sbjct 143932 AAAAGCTCCTTTGCGTTTGCCTCCTCCTTGGTCGACGTATCTGGCAGTGTCGTTAAAGAC 143991 Query 69789 TCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCA 69831 | |||||||| || | ||| || || | ||||| |||||| Sbjct 143992 GCGAAGCATCGGGATGAGACCGTTCGACGTGCCATTAGTTCCA 144034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686782589094360