Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3 179 5e-40 >seq3 Length=147229 Score = 179 bits (198), Expect = 5e-40 Identities = 614/943 (65%), Gaps = 23/943 (2%) Strand=Plus/Plus Query 111221 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 111280 ||| |||| ||||| |||| || || | ||||| |||||| || ||||| ||| Sbjct 143459 ACAAACTTGGGAAGAGCGAGAGAAGCGAGGTTGCACACAGCCACTTCGTCCTTGGAGGTG 143518 Query 111281 TACTCTAAAATTTCTGTACATAAGTTG---GAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 ||||| | || || || || | |||| |||| ||| || || | |||| |||| Sbjct 143519 TACTCCATGATCTCCGTGCAAAGGTTGCTTGAACG---AATGGTGCCGAGGTTCTGTTGG 143575 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 || ||| |||||||| |||||||| ||||| |||||||| || ||||| |||| Sbjct 143576 TTGGACTTGCGGTTGCACGAGTCCTTGTATAGCATATAGGGCGTGCCGGTCTCTATCTGG 143635 Query 111398 GATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCC 111457 | || || || ||| | || ||| || | |||| || |||||| Sbjct 143636 CTCTCCAGGATGGCGAACCAGAGCTCTTGGGCCTTAACGCTCCTCCTGGCTCGGCCCTCC 143695 Query 111458 GCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGT 111517 ||||| |||||||| || ||||||||||| ||| | || | | || || Sbjct 143696 TGTTCGTATCGAGTGTAGAGCGCCTCAAACTCCTCTCCCCAGACATCAGCCAAGCCGGGA 143755 Query 111518 GCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCA--ACCCGCTTCATGAAAA 111575 || | || ||||| || || ||||| | || || ||| || ||||||||||| | Sbjct 143756 GCTTCGTTGGGACAAAACAGGGACCACT--CCTGATTGCTCTCCACTCGCTTCATGAATA 143813 Query 111576 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGT 111635 |||| |||| ||| || | ||||||| ||||| || ||| || | || |||| Sbjct 143814 GGTCCGGAACCCAGAGCGCGTAAAAGAGGTCTCTGGCGCGCAGCTCCTCCTTGCCGTGGT 143873 Query 111636 TGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCG 111694 | || | | ||| || ||||| | | ||||||||||||||||| | ||||| || Sbjct 143874 T-CTTCTTCAGCTCCAGAAACTCGAAAACGTCCGCGTGCCATGGCTCCAAGTAGACAGCA 143932 Query 111695 ATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACG 111751 | || ||| || || | || |||| | || || | || ||| ||||||| ||| Sbjct 143933 AAAGCTCCTTTGCGTTTGCCTCCTCCTTGGTCGACGTATCTGGCAGTGTCGTTAAAGACG 143992 Query 111752 CGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATT 111810 |||||||| || || | ||| | || ||||| || || || || || | | Sbjct 143993 CGAAGCATCGGGATGAGACCGTTCGACGTGCCATTAGTTCCACGGAT-GTAGCTGTGCGA 144051 Query 111811 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACA 111870 ||| | | || | | | || || || ||||| ||| ||||| || || Sbjct 144052 GGCACGGATTGTGTGTACGCTGAGGCCGATGCCACCAGCGGCCTTGGAGATCAAGGCGCA 144111 Query 111871 CTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCA 111930 | | | || || | ||||| || | ||| ||||||| | | | || | ||||| Sbjct 144112 TTGCTTTAGGGTGTCGTAGATGCCCTCGATGCTGTCCTCCCTCATCGTGAGCAAAAAGCA 144171 Query 111931 ACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 111990 || | ||||| | ||| || || |||||||| || || || |||||| | || Sbjct 144172 GGAAGAGAGTTGCGGCCGCTCTGTGCCGGCGTTGAAGAGAGTGGGGGTGGCGTGAGTAAA 144231 Query 111991 -CATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGA 112049 | | || |||||| | ||| ||||| | | ||| | |||||||| || |||| Sbjct 144232 GTAGAGGTT-GGACATGAGATTGTAGGTCTCAATGGCAGCAGCAATGTCTCCCATATGGA 144290 Query 112050 TGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCC 112109 ||||||| || || ||||||| ||||| || || | || | || |||| || | | Sbjct 144291 TGCCGATGGCAACTCGCATGATCATGTGTTGAGGCCTCTCAACGATCTTGCCCTCCA--C 144348 Query 112110 GTTGAAGA--TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAA 112150 ||||||| |||||| |||| | ||| || | ||||||||| Sbjct 144349 CTTGAAGAGGTAGCTCCTCTCCAAGGTCTTAAAGCCAAAGTAA 144391 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 110667 TGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATG 110726 ||||||||||| || || || || | | | | | ||||||||| | ||||| | Sbjct 142887 TGTTGACAATGGTGAAGTCTCCAGCCAAGATGCGGCGAGAGTAGATGTTGGAGGTGTAGG 142946 Query 110727 GTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCA 110786 | |||||||| ||||| || || | ||| || | |||||||||||| ||||| || |||| Sbjct 142947 GCTCAAAGCACTCATTGTTGCCGAGGATCTGCGAGGTGGAGGCTGTAGGCATGGGAGCCA 143006 Query 110787 TCAAAAGACTGTTACGAAGACCCTTCTCCTTGAT 110820 ||| | ||||| | || || | ||||||||| Sbjct 143007 CCAACAAGCTGTTCCTCAGGCCGTGCTCCTTGAT 143040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627916606970400