Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3 167 3e-36 seq14654 104 3e-17 seq182 95.1 1e-14 seq1371 84.2 3e-11 >seq3 Length=147229 Score = 167 bits (184), Expect = 3e-36 Identities = 628/975 (64%), Gaps = 19/975 (2%) Strand=Plus/Minus Query 104139 GAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACG 104196 |||||||| | | ||| ||||| | || ||| | |||| |||||| ||||||| | Sbjct 144407 GAGACTACAATTACTCTTACTTTGGCTTTAAGACCTTGGAGAGGAGCTACCTCTTCAAGG 144348 Query 104197 GCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 | || || | | || | || || ||||| ||||||| || |||||||| || Sbjct 144347 --TGGAGGGCAAGATCGTTGAGAGGCCTCAACACATGATCATGCGAGTTGCCATCGGCAT 144290 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATG-T 104315 ||| || |||||||| | ||| | | ||||| ||| | |||||| || | | | Sbjct 144289 CCATATGGGAGACATTGCTGCTGCCATTGAGACCTACAATCTCATGTCC-AACCTCTACT 144231 Query 104316 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTT 104375 | | |||||| || || || |||||||| || || ||| | || ||| | || | Sbjct 144230 TTACTCACGCCACCCCCACTCTCTTCAACGCCGGCACAGAGCGGCCGCAACTCTCTTCCT 144171 Query 104376 GCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGT 104435 |||| | || | | | ||||||| ||| | || ||||| | || || | | | | Sbjct 144170 GCTTTTTGCTCACGATGAGGGAGGACAGCATCGAGGGCATCTACGACACCCTAAAGCAAT 144111 Query 104436 GTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCA 104495 | || ||||| ||| ||||| || || || | | | || | | ||| Sbjct 144110 GCGCCTTGATCTCCAAGGCCGCTGGTGGCATCGGCCTCAGCGTACACACAATCCGTGCCT 144051 Query 104496 ATAA-ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 104554 | | || || || || || ||||| || | ||| | || || ||||||||| Sbjct 144050 CGCACAGCTAC-ATCCGTGGAACTAATGGCACGTCGAACGGTCTCATCCCGATGCTTCGC 143992 Query 104555 GTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATC 104611 || ||||||| ||| || | || || | |||| || | || || ||| || | Sbjct 143991 GTCTTTAACGACACTGCCAGATACGTCGACCAAGGAGGAGGCAAACGCAAAGGAGCTTTT 143932 Query 104612 GCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAAC 104671 || ||||| | ||||||||||||||||| | | ||||| || ||| || ||| Sbjct 143931 GCTGTCTACTTGGAGCCATGGCACGCGGACGTTTTCGAGTTTCTGGAGCTGAAGAAGAAC 143872 Query 104672 CAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTC 104731 || || | |||||| ||| | | || ||||| | ||| |||||| |||| || || Sbjct 143871 CACGGCAAGGAGGAGCTGCGCGCCAGAGACCTCTTTTACGCGCTCTGGGTTCCGGACCTA 143812 Query 104732 TTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCT 104791 ||||||||| |||| ||| | | | ||||| || |||||||| || | || || Sbjct 143811 TTCATGAAGCGAGTGGAGAGCAATCAGGAGTGGTCCCTGTTTTGTCCCAACGAAGCTCCC 143752 Query 104792 GGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAA 104851 || | | |||| | ||| ||||||||||| || || ||||| ||||| | || Sbjct 143751 GGCTTGGCTGATGTCTGGGGAGAGGAGTTTGAGGCGCTCTACACTCGATACGAACAGGAG 143692 Query 104852 GGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAA 104911 || || || | || || || || | ||| || || || || || Sbjct 143691 GGCCGAGCCAGGAGGAGCGTTAAGGCCCAAGAGCTCTGGTTCGCCATCCTGGAGAGCCAG 143632 Query 104912 ACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAA 104971 | ||||| || || || || ||||| ||||| ||| | || |||| ||| || ||| Sbjct 143631 ATAGAGACCGGCACGCCCTATATGCTATACAAGGACTCGTGCAACCGCAAGTCCAACCAA 143572 Query 104972 AAGAATTTGGGTGTGATCAAGAGTTC---CAATCTCTGTACAGAAATCTTGGAATTTACA 105028 |||| | || | || |||| ||| || || || || ||| |||| | || Sbjct 143571 CAGAACCTCGG---CACCATTCGTTCAAGCAACCTTTGCACGGAGATCATGGAGTACACC 143515 Query 105029 GACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGAT 105088 ||| || || ||||||||| |||||||| || ||||||| ||||||| |||| | Sbjct 143514 TCCAAGGACGAAGTGGCTGTGTGCAACCTCGCTTCTCTCGCTCTTCCCAAGTTTGTG--T 143457 Query 105089 CCAGAGACAAAGACA 105103 ||| ||| ||||| Sbjct 143456 CCATCGACGCAGACA 143442 Score = 95.1 bits (104), Expect = 1e-14 Identities = 302/463 (65%), Gaps = 14/463 (3%) Strand=Plus/Minus Query 105485 ATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACC 105544 ||||||||| | || || | ||||| | | ||||||| ||||| |||||||||||| Sbjct 143040 ATCAAGGAGCACGGCCTGAGGAACAGCTTGTTGGTGGCTCCCATGCCTACAGCCTCCACC 142981 Query 105545 GCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA-TCTGAG 105603 | || ||| | || || ||||| |||||||| |||||||| | |||||||| ||| | Sbjct 142980 TCGCAGATCCTCGGCAACAATGAGTGCTTTGAGCCCTACACCTCCAACATCTACTCT-CG 142922 Query 105604 AAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGA 105663 | | | | || ||||| || |||||||||| || | || | ||||| | | | Sbjct 142921 CCGCATCTTGGCTGGAGACTTCACCATTGTCAACAGCCACTTGATGCAAGACCTGAGAAA 142862 Query 105664 GATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTG----AAAGCGGGTGGTTCCA 105719 | || || ||| | || ||||| | | ||||| | | | || || Sbjct 142861 CTTGGGCCTGTGGAGCGCCGAGCTGAAGAACCAACTGGTGGCTCACAAC----GGCTCTG 142806 Query 105720 TTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGA-- 105777 ||||| | ||| || || | | ||||||||| ||||| || || ||||| Sbjct 142805 TTCAACACCTTGCCTGCATCCCGGAACACATTAAGAAGCTGTACAAGACCGTGTGGGAGG 142746 Query 105778 AATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAG 105837 || | | | || || |||||||| || ||||| || || || ||||| || Sbjct 142745 TGTCCCAACGTACCTTG--ATCGACATGGCGGCGGATCGAGGGGCGTTTATCGATCAGAG 142688 Query 105838 TCAAAGTATGAATCTCTTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACAT 105897 || || | || | ||| | || | | |||||||| | || |||||| | Sbjct 142687 CCAGAGCTTCAACGTGCACATCAAGGCCCCCTCCTTTGCCAAGCTCACCTCGATGCACTT 142628 Query 105898 GTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTC 105940 ||| |||||||||||| | |||||||| ||||| |||||| Sbjct 142627 TTACGCTTGGAAGAAGGGATTGAAAACGGGAATGTACTACCTC 142585 >seq14654 Length=53260 Score = 104 bits (114), Expect = 3e-17 Identities = 177/255 (69%), Gaps = 5/255 (2%) Strand=Plus/Minus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 |||||| | | ||||| | |||||| | || || || | | ||||||||| || Sbjct 48440 GAGAAGGACCGCCTCTTCAACGCCATCGAGACCGTGCCTACCGTCCGAAAGAAAGCTGAG 48381 Query 94762 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTC-CTTTGCTGAGCGACTCTTCGCATT 94820 ||||| || |||||| ||| ||| | || ||||||| | || ||| | || || Sbjct 48380 TGGGCCATCAAGTGG----ATAGAAAACCCCGACGGCTTTGCTCACCGGCTCGTGGCCTT 48325 Query 94821 TGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAA 94880 || ||| ||||| ||||| |||||||||||||| ||||| || | |||| | ||||| Sbjct 48324 CGCTGCTGTGGAGGGCATCTTTTTCTCTGGTTCCTTTTGCGCCATCTTTTGGTTGAAGAA 48265 Query 94881 GCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACT 94940 | |||| || ||||| || || || ||| || |||| ||| | |||||||| | Sbjct 48264 GAGAGGCCTTATGCCTGGACTTTGTTTCAGTAATGAGCAGATCAGCAGGGACGAGGGCAT 48205 Query 94941 CCACCAAGAGTTTGC 94955 ||| || ||||| Sbjct 48204 GCACTGTGACTTTGC 48190 >seq182 Length=84632 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 94712 AGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGA 94771 |||||||| | ||||| | || || || | | | ||||| || || ||||| || Sbjct 22067 AGCTCTTTAACGCCATTGAGACGGTGCCTAGCGTGAAGAAGAAGGCCGAATGGGCGCTGC 22126 Query 94772 AGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTG 94831 ||| | || |||| | | | |||||| ||| ||| | || ||||| || | Sbjct 22127 GTTGGATAGA---AAAGCCACAAGCTTTTGCTCTGCGGCTCATTGCCTTTGCCGCAGTGG 22183 Query 94832 AGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCA 94891 | || ||||||||||| || ||||||||||| || | ||||| ||||| |||| || | Sbjct 22184 AAGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTGAAGAAAAGAGGGCTGA 22243 Query 94892 TGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 |||| || ||| ||||| ||||||||| || Sbjct 22244 TGCCTGGGCTCAGCTTCAGCAACGAGCTCAT 22274 >seq1371 Length=2279 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/198 (70%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 9694 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 9753 ||| |||||| |||||||| || |||||||||||| || ||| | ||| || | Sbjct 694 CTTGCCCACGCTGTCAATCTCGTCGATGAAGACGATGGCGGGGGCATTCTTGCGCGCCTC 635 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA---GTT 9810 ||||| || | || | |||||||| || || || |||||||||||| |||| | | Sbjct 634 CTCAAAAAGGTTACGAATGCGCTTGGCTCCTACGCCTACAAACATCTCCTCAAACTCGCT 575 Query 9811 TGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 9870 || | || | | || |||||| || || | || || |||| |||| |||||| | Sbjct 574 AGCAGAGGCAAA---GAAGAAGGGCACGTTGGCCTCTCCGGCAACGGCTTTGGCGAGCAA 518 Query 9871 AGTCTTACCCGTACCTGG 9888 || || || || ||||| Sbjct 517 GGTTTTGCCGGTGCCTGG 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583153633118760