Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq14654 259 5e-64 seq3 235 6e-57 seq182 150 2e-31 seq490 82.4 8e-11 >seq14654 Length=53260 Score = 259 bits (286), Expect = 5e-64 Identities = 570/839 (68%), Gaps = 24/839 (3%) Strand=Plus/Plus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 ||| || || || ||| | || |||||||||||||| |||||||| |||||| |||||| Sbjct 47901 ATACTCTCCCACGCGCCTCTCGAAAAAGTTGGTCTTGCCTTCCAAGGAGATGAGCTCCAT 47960 Query 74522 CCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTG-----CCATG 74576 |||||| || |||||| | || ||| || |||||| | | | | | ||| Sbjct 47961 CCAGTCAAACGGGTTCGTAGCGTTGTAGAT---CTTCTCGC--AGCCGAGGGCCACCAGC 48015 Query 74577 AGGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGT 74636 ||||| ||||||||||| | ||||||||| ||| | || | |||||||||||| Sbjct 48016 AGGCGGTCCGCCACAAACTCAATGTACTGGCACATGAGCTCGGCGTTCATGCCGATGAGC 48075 Query 74637 TTGCAC-GGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAAT 74695 | ||| || || | |||| | | |||||| | || | ||| ||| || ||| Sbjct 48076 CT-CACTGGAAGGGACTCGCTCACAAACTCCTTTTCAATCTCCACTGCCTCAGCGATAAT 48134 Query 74696 CTTGT---GAATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGC 74752 |||| | | ||| ||||| || | || | ||| | || | | | || ||| Sbjct 48135 CTTGGTGGGCACGTCGTTGGAGGGTCTGTTCTGGATCATATTGTAG--AGGAGGCA-GGC 48191 Query 74753 AAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATT-CGAAAACGAAAGGCCAG 74811 ||| || ||| ||| || || ||||| ||| ||||| | |||| |||| |||| Sbjct 48192 AAAGTCACAGTGCATGCCCTCGTCCCTGCTGATCTGCTCATTACTGAAAC-AAAGTCCAG 48250 Query 74812 GCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGC 74871 ||||||| || | ||||||||||||||||||||| || ||||||||| ||| ||||||| Sbjct 48251 GCATAAGGCCTCTCTTCTTCAACCAAAAGATGGCGCAAAAGGAACCAGAGAAAAAGATGC 48310 Query 74872 CTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC-ATCCAA 74930 | || ||| || ||||| || || || || || || | | || || ||||| Sbjct 48311 CCTCCACAGCAGCGAAGGCCACGAGCCGGTGAGCAAA-GCCGTCGGGGTTTTCTATCCAC 48369 Query 74931 GTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGG 74990 | ||||| |||||||| | ||| | ||| || || ||||| || | ||||||| Sbjct 48370 TTGATGGCCCACTCAGCTTTCTTTCGGACGGTAGGCACGGTCTCGATGGCGTTGAAGAGG 48429 Query 74991 CTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAA 75050 | ||||||| ||| ||||| ||| |||| |||| || |||||| ||||||| Sbjct 48430 CGGTCCTTCTCCAAGGGGTCCTTCACGTAGGTGTCGATCAGGAGGGAGTACATCTCCGAG 48489 Query 75051 TGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTAC 75109 || || ||| || ||| ||| | ||||||| | || ||||| | | || || Sbjct 48490 TGGATATTCTCAATGG-CGATCTGAAAGCCGTAGAAGCAGCGAGCCTCGGGTACTTGCAC 48548 Query 75110 ATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAA 75169 ||||| || | | | | ||||||| ||||| |||||||||||||| || || Sbjct 48549 CTCCTTCATGAAGCGGACGGCCAAGTTCTCCACAACGATTCCGTCCGAGGCGGCAAAGAA 48608 Query 75170 AGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAG 75229 ||||| || ||||||| | |||||| || |||| ||| || | ||| || | || Sbjct 48609 GGCCAGGACGTGGGTGATAAAATAGCGCTCGTCCTCAGAGAGCTTCTTCCAGTCGGTGAG 48668 Query 75230 GTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACA 75288 || || | || | ||||||| | |||||||| || | ||||| ||||||| Sbjct 48669 ATCTTGGGCAAGGTCCACCTCCTCGGCGGTCCAGAAGCTGGCCTCGGCCTTCTTGTACA 48727 >seq3 Length=147229 Score = 235 bits (260), Expect = 6e-57 Identities = 477/698 (68%), Gaps = 10/698 (1%) Strand=Plus/Minus Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329 |||||||| |||||||| || || || |||||||| || || | | || || | || Sbjct 144234 TACTTTACTCACGCCACCCCCACTCTCTTCAACGCCGGCACAGAGCGGCCGCAACTCTCT 144175 Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 |||||| || | |||||| ||| ||| ||||| ||||||||||| || || ||| Sbjct 144174 TCCTGCTTTTTGCTCACGATGAGGGAGGACAGCATCGAGGGCATCTACGACACCCTAAAG 144115 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCG 53448 | || ||| ||||||||| | ||||| ||||| || | | | | | |||| Sbjct 144114 CAATGCGCCTTGATCTCCAAGGCCGCTGGTGGCATCGGCCTCAGCGTACAC-ACAATCCG 144056 Query 53449 TGCGAACGGCACACC--AATCAAGGGGACGAACGGCGTCGCCG-ATGGAATCGTGCCTAT 53505 ||| ||||| | ||| || || || ||| || || | || || | || || Sbjct 144055 TGC--CTCGCACAGCTACATCCGTGGAACTAATGGC-ACGTCGAACGGTCTCATCCCGAT 143999 Query 53506 GCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGG 53565 ||| |||||||| ||| |||| ||| | |||||| |||| || || || || ||||| || Sbjct 143998 GCTTCGCGTCTTTAACGACACTGCCAGATACGTCGACCAAGGAGGAGGCAAACGCAAAGG 143939 Query 53566 GTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCG 53625 | || || ||||| | ||||| |||||||| ||| || | |||||||| |||||| Sbjct 143938 AGCTTTTGCTGTCTACTTGGAGCCATGGCACGCGGACGTTTTCGAGTTTCTGGAGCTGAA 143879 Query 53626 TCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCC 53685 ||| || || | || ||| ||||| | | ||||| ||| || || ||| |||| Sbjct 143878 GAAGAACCACGGCAAGGAGGAGCTGCGCGCCAGAGACCTCTTTTACGCGCTCTGGGTTCC 143819 Query 53686 GGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGA 53745 |||||| |||||| | ||||||| | ||||||||| |||| | || || ||||| Sbjct 143818 GGACCTATTCATGAAGCGAGTGGAGAGCAATCAGGAGTGGTCCCTGTTTTGTCCCAACGA 143759 Query 53746 GTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACG-TACG 53804 |||||| | | ||||| || ||||||||| | | | | || | || |||| Sbjct 143758 AGCTCCCGGCTTGGCTGATGTCTGGGGAGAGGAGTTTGAGGCGCTCTA-CACTCGATACG 143700 Query 53805 CAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCA 53864 | ||||||| || || || || ||||| | ||| | ||| || ||||| Sbjct 143699 AACAGGAGGGCCGAGCCAGGAGGAGCGTTAAGGCCCAAGAGCTCTGGTTCGCCATCCTGG 143640 Query 53865 AGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGA 53924 |||||||| | ||||| || ||||| || ||| |||||||| ||| |||| ||| Sbjct 143639 AGAGCCAGATAGAGACCGGCACGCCCTATATGCTATACAAGGACTCGTGCAACCGCAAGT 143580 Query 53925 GCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 |||||| ||||| ||||| ||| || |||||| Sbjct 143579 CCAACCAACAGAACCTCGGCACCATTCGTTCAAGCAAC 143542 Score = 91.5 bits (100), Expect = 2e-13 Identities = 290/449 (65%), Gaps = 3/449 (1%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||||| | ||| | || | ||||| || ||||| || || || || | |||||| | Sbjct 143028 GGCCTGAGGAACAGCTTGTTGGTGGCTCCCATGCCTACAGCCTCCACCTCGCAGATCCTC 142969 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 |||||||| ||| || ||||| ||||| ||||||||||| ||||| | | | || Sbjct 142968 GGCAACAATGAGTGCTTTGAGCCCTACACCTCCAACATCTACTCTCGCCGCATCTTGGCT 142909 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGG 55657 || || || ||| |||||| ||| | | | |||||| || | | |||| Sbjct 142908 GGAGACTTCACCATTGTCAACAGCCACTTGATGCAAGACCTGAGAAACTTGGGCCTGTGG 142849 Query 55658 AACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGAG--- 55714 | | | || | |||| | | ||| || || || || || | || | Sbjct 142848 AGCGCCGAGCTGAAGAACCAACTGGTGGCTCACAACGGCTCTGTTCAACACCTTGCCTGC 142789 Query 55715 ATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTG 55774 || || | | ||| || | ||| ||| ||||||||| | | || | || Sbjct 142788 ATCCCGGAACACATTAAGAAGCTGTACAAGACCGTGTGGGAGGTGTCCCAACGTACCTTG 142729 Query 55775 ATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTC 55834 || |||||| || ||||| || |||| ||||| ||| |||| | ||| | | Sbjct 142728 ATCGACATGGCGGCGGATCGAGGGGCGTTTATCGATCAGAGCCAGAGCTTCAACGTGCAC 142669 Query 55835 ATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGA 55894 || || || || | |||||| | | ||||||||||||||||| |||||||||||| Sbjct 142668 ATCAAGGCCCCCTCCTTTGCCAAGCTCACCTCGATGCACTTTTACGCTTGGAAGAAGGGA 142609 Query 55895 CTCAAGACGGGTATGTACTATCTGCGGAC 55923 | || ||||| |||||||| || |||| Sbjct 142608 TTGAAAACGGGAATGTACTACCTCAGGAC 142580 >seq182 Length=84632 Score = 150 bits (166), Expect = 2e-31 Identities = 365/545 (67%), Gaps = 11/545 (2%) Strand=Plus/Minus Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 ||||| || |||| ||||||||| |||||||| | || || || || ||| Sbjct 22307 GCAAAGTCACAATGCATGCCTTCATCCCTGCTTATGAGCTCGTTGCTGAAGCTGAGCCCA 22248 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| || || | ||||||| ||| |||||||| |||||||| || |||||||||| Sbjct 22247 GGCATCAGCCCTCTTTTCTTCAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATG 22188 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC-ATCCA 74929 ||||| || |||||||| | || || | || || | | | | || ||||| Sbjct 22187 CCTTCCACTGCGGCAAAGGCAATGAGCCGCAGAGCAAAAGCT-TGTGGCTTTTCTATCCA 22129 Query 74930 AGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAG 74989 | | | |||||||| || || || || ||| || || || || || | ||||| Sbjct 22128 ACGCAGCGCCCATTCGGCCTTCTTCTTCACGCTAGGCACCGTCTCAATGGCGTTAAAGAG 22069 Query 74990 GCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGA 75049 | ||||| |||| || |||||| |||| || | || |||||| ||||||| Sbjct 22068 CTTAGCCTTTTCTTTCACGTCTTTGACGTAGGTGTCGATGAGCAGCGAGTACATCTCCGA 22009 Query 75050 ATGAATCGACTCGTTGAACGACTGGTACG-CGTAGAAAGACCGCGCCTCTGCAATCTGTA 75108 || || ||| || ||| | | | | ||||||| | || ||||| | | || | Sbjct 22008 GTGGATGTTCTCCATG-GCGATTTGAAAGCCGTAGAAGCAACGTGCCTCCGGCAGTTGAA 21950 Query 75109 CATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAA 75166 | ||||| |||| || | | ||||||| |||||||| |||||||| ||||| Sbjct 21949 CTTCCTTCATGAAGCGGGCA--GCAAGGTTCTCCACCACGATGCCATCCGAGGCAGCGAA 21892 Query 75167 AAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGT---CCCAATC 75223 ||| |||| || |||||||||||||| || || || || |||| ||| || Sbjct 21891 AAAGGCCAACACGTGCTTGATAAAGTGGCGTTCGTCCTCCACAAGCTTGTGGCTCCAGTC 21832 Query 75224 CTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTT 75283 | |||||| | ||| || | |||||| |||||||| || || | ||||| || Sbjct 21831 GGTAAGGTCCTGCACCAGGTCTACCTCCTCCACCGTCCAAAAGCTAGCCTGGGCCTTCTT 21772 Query 75284 GTACA 75288 ||||| Sbjct 21771 GTACA 21767 >seq490 Length=6195 Score = 82.4 bits (90), Expect = 8e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 117353 GTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGA 117412 ||||| || || ||||| || | | ||| || |||||||| ||| || | ||| Sbjct 2540 GTACCAAACTGACCACTAGGATGAAGCAGGGGCAAGTTGTTGGAGCCAGGGAAATCTTGT 2599 Query 117413 GCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCC 117472 |||| ||||| || || || || | | ||||| || || ||||| || || ||||| Sbjct 2600 GCCATGTTGATGATGGTGCCATGTAAGGAGGCCTCCCCGTGATGATAAGCTGTGTGCTCT 2659 Query 117473 GCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAG 117532 | ||| || ||||||| || ||||| || || || || || || || | |||| Sbjct 2660 GACACATAACCCGCCAATTGGGCCACTTTGATCTCGTTGGTAAGCTTTCGTTTAAAGCAG 2719 Query 117533 GCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 ||||||| ||| || || || | || || || ||||| Sbjct 2720 GCATAAAGCACTTTACGTTGTCCAGGTTTGAGGCCATC 2757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547115455900200