Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq7184 89.7 4e-13 seq629 87.8 1e-12 seq201 87.8 1e-12 seq104 87.8 1e-12 seq14642 84.2 2e-11 seq1590 84.2 2e-11 >seq7184 Length=931 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || || |||||||| || || || || | || || || ||| || Sbjct 370 ATGCAGATCTTCGTCAAGACTCTTACCGGAAAGACCATCACCCTGGAAGTGGAGAGCTCC 311 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| || |||| || || ||||| || ||||| || || |||| | Sbjct 310 GAC-----ACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATTCCCCCCG 256 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || || ||||| || || |||| |||| |||| |||| | |||| Sbjct 255 ACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCTTGGCTGATT 196 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| ||| |||| | || ||||| | ||| | |||||||| Sbjct 195 ACAACATCCAAAAGGAGTCCACTCTCCACTTGGTCCTTCGTCTTCGTGGCGG 144 Score = 82.4 bits (90), Expect = 5e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 ||||| ||||| || ||||| ||||| | || || ||||| || | || ||| Sbjct 751 GTCAAGCAAAAGATCCAGGACAAGGAAGGCATCCCTCCCGATCAGCAGCGCCTGATCTTT 692 Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984 || || || || |||| |||| |||| |||| |||| ||||||||||| || ||| | Sbjct 691 GCTGGCAAGCAGCTGGAGGACGGCCGCACCTTGGCCGACTACAACATCCAGAAGGAGTCC 632 Query 27985 ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||| | || ||||| |||||| || | || ||| Sbjct 631 ACTCTCCACTTGGTGTTGCGTCTGAGGGGAGGC 599 >seq629 Length=7623 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 ||||| || || || ||||| || ||| |||| || ||||| || || || || Sbjct 4040 GTCAAGCAGAAGATTCAGGACAAGGAGGGTATTCCCCCTGACCAGCAGCGCTTGATCTTC 4099 Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984 ||||| || || |||| |||| |||| | || |||| ||||||||||| || ||| | Sbjct 4100 GCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCC 4159 Query 27985 ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 || | || ||||| |||||| | ||||||||| Sbjct 4160 ACCCTCCACTTGGTCTTGCGTCTCCGTGGCGGC 4192 >seq201 Length=21658 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/233 (68%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| || ||||| || || ||||| || || || |||| || || ||| | Sbjct 13540 AATGCAAATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTGGAGAGCTC 13599 Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 |||| || |||| ||||| || || || ||||| || || | || Sbjct 13600 CGAC-----ACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATACCTCCC 13654 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || || || || || || || |||| |||| |||| | || |||| Sbjct 13655 GACCAGCAGCGTTTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGAC 13714 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||| ||| |||| | || ||||| | ||| | ||||| || Sbjct 13715 TACAACATCCAAAAGGAGTCCACTCTCCACTTGGTCCTTCGTCTCCGTGGTGG 13767 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/233 (68%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || || |||||||| || || |||||| | || || || ||| || Sbjct 13769 ATGCAGATCTTCGTCAAGACTCTTACCGGCAAGACTATTACCCTGGAAGTGGAGAGCTCC 13828 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| || |||| ||||| || || || ||||| ||||| |||| | Sbjct 13829 GAC-----ACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAAGGCATTCCTCCCG 13883 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || || || || || || ||||| |||| |||| | | |||| | Sbjct 13884 ACCAGCAGCGCCTCATCTTCGCTGGCAAGCAGTTGGAGGACGGCCGCACCCTCGCCGACT 13943 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||| || ||| ||| | || |||||| | ||| || | || ||| Sbjct 13944 ACAACATCCAGAAGGAGTCCACCCTCCACTTGGTTCTTCGTCTGAGGGGAGGC 13996 >seq104 Length=38954 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/233 (68%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| || || || || || ||||| || || || | || || || ||| | Sbjct 26426 AATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACAATCACTTTGGAGGTGGAGAGCTC 26367 Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 |||| || |||| || || ||||| || ||||| ||||| |||| Sbjct 26366 CGAC-----ACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAAGGCATTCCCCCT 26312 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | || || ||||| || || |||| |||| || | |||| |||| Sbjct 26311 GACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGTACCTTGGCCGAC 26252 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||| ||| |||| | || ||||| | ||| |||| || || Sbjct 26251 TACAACATCCAAAAGGAGTCCACTCTCCACTTGGTCCTCCGTCTGCGCGGTGG 26199 >seq14642 Length=99085 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| || || || || || || || || || || | || || || ||| | Sbjct 59544 AATGCAAATCTTCGTCAAGACCCTCACGGGAAAGACCATCACCCTCGAGGTGGAGAGCTC 59485 Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 |||| || |||| ||||| ||||| || ||||| ||||| |||| Sbjct 59484 CGAC-----ACCATCGAGAACGTCAAGCAAAAGATCCAGGACAAGGAAGGCATTCCCCCT 59430 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | || |||||||| || || |||| |||| || | |||| |||| Sbjct 59429 GACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGTACCTTGGCCGAC 59370 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| || ||| |||| | || ||||| | ||| || | || ||| Sbjct 59369 TACAACATCCAGAAGGAGTCCACTCTCCACTTGGTCCTTCGTCTGAGGGGAGGC 59316 >seq1590 Length=2191 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| | ||| || || || || || ||||| | || || || | Sbjct 342 AATGCAAATTTTCGAGAAGACCCTCACGGGAAAGACCATTACCCTCGAAGTGGAGTCATC 283 Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 |||| || |||| ||||| || || || ||||| ||||| | || Sbjct 282 CGAC-----ACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAAGGCATCCCTCCC 228 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||||| | || || |||||||| ||| | || |||| |||| |||| |||| Sbjct 227 GACCAGCAACGCCTGATCTTCGCCGGAAAGCAACTCGAGGACGGCCGCACCTTGGCCGAC 168 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| || ||| ||| | || |||||| | ||| |||| || ||| Sbjct 167 TACAACATCCAGAAGGAGTCCACCCTCCACTTGGTTCTTCGTCTGCGGGGAGGC 114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355798649363973