Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balamuthia_20mandrillaris_20[genbank_20GCA_5F001262475.1_202015-08- 05] 14,699 sequences; 44,270,879 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq182 123 4e-23 seq3 109 8e-19 >seq182 Length=84632 Score = 123 bits (136), Expect = 4e-23 Identities = 303/454 (67%), Gaps = 4/454 (1%) Strand=Plus/Minus Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680 |||| | ||| ||||| |||||||| | ||||||||| || || || | ||||| Sbjct 22319 AACAGCATACAAGCAAAGTCACAATGCATGCCTTCATCCCTGCTTATGAGCTCGTTGCTG 22260 Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 || ||||||||||||| || || | || || ||||| || || || ||| || || Sbjct 22259 AAGCTGAGCCCAGGCATCAGCCCTCTTTTCTTCAGCCAGAAGATGGCGCAGAAGGAGCCC 22200 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA-CTGGCATC 46799 || ||||| |||||||| || || || || || | || | | | || || | | Sbjct 22199 GAGAAGAAGATGCCTTCCACTGCGGCAAAGGCAATGAGCCGCAGAGCAAAAGCTTGTGGC 22140 Query 46800 ATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTAT 46859 || | ||||| | | ||||| || ||||| ||||| || | ||||| || || || Sbjct 22139 -TTTTCTATCCAACGCAGCGCCCATTCGGCCTTCTTCTTCACGCTAGGCACCGTCTCAAT 22081 Query 46860 AGCATTAAAGAG-AAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGAC 46918 || |||||||| || |||| |||| ||||| || || || || || | || Sbjct 22080 GGCGTTAAAGAGCTTAGCCTTTTCTTTCAC-GTCTTTGACGTAGGTGTCGATGAGCAGCG 22022 Query 46919 TATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTT 46978 ||||| || || || ||||| || || || || ||||| ||||| || || | ||| | Sbjct 22021 AGTACATCTCCGAGTGGATGTTCTCCATGGCGATTTGAAAGCCGTAGAAGCAACGTGCCT 21962 Query 46979 CAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCAC 47038 | | | || || || | || || ||| | ||||| ||| || ||||| Sbjct 21961 CCGGCAGTTGAACTTCCTTCATGAAGCGGGCAGCAAGGTTCTCCACCACGATGCCATCCG 21902 Query 47039 TAGCAGCAAAAAATGCCAATACATGTTTAATaaa 47072 ||||| ||||| ||||| || || || ||||| Sbjct 21901 AGGCAGCGAAAAAGGCCAACACGTGCTTGATAAA 21868 >seq3 Length=147229 Score = 109 bits (120), Expect = 8e-19 Identities = 549/871 (63%), Gaps = 8/871 (1%) Strand=Plus/Plus Query 76258 CACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT--TAGCATTG 76315 ||||||| | |||||| | ||| || || || || || || || || | | | | | Sbjct 143458 CACAAACTTGGGAAGAGCGAGAGAAGCGAGGTTGCACACAGCCACTTCGTCCTTGGA--G 143515 Query 76316 GCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGG 76375 | || | || ||||||||||| || || || | || || || || || |||||| Sbjct 143516 GTGTACTCCATGATCTCCGTGCAAAGGTTGCTTGAACGAATGGTGCCGAGGTTCTGTTGG 143575 Query 76376 TTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGT 76435 ||| ||| ||| || |||||||| || || | | | || || || || || ||||| Sbjct 143576 TTGGACTTGCGGTTGCACGAGTCCTTGTATAGCATATAGGGCGTGCCGGTCTCTATCTGG 143635 Query 76436 GATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCT 76495 || | || | ||||| || || || | | || ||| ||| Sbjct 143636 CTCTCCAGGATGGCGAACCAGAGCTCTTGGGCCTTAACGCTCCTCCTGGCTCGGCCCTCC 143695 Query 76496 CTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGA 76555 ||| ||| | || || | | ||||| || |||||||| |||||| |||| || ||| Sbjct 143696 TGTTCGTATCGAGTGTAGAGCGCCTCAAACTCCTCTCCCCAGACATCAGCCAAGCCGGGA 143755 Query 76556 CATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGA 76615 ||| || ||||| | || |||||||| || || || || ||||| || || Sbjct 143756 GCTTCGTTGGGACAAAACAGGGACCACTCCTGATTGCTCTCCACTCGCTTCATGAATAGG 143815 Query 76616 TCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTC 76675 || || | ||| || || ||| || |||| || | | || || || || ||| Sbjct 143816 TCCGGAACCCAGAGCGCGTAAAAGAGGTCTCTGGCGCGCAGCTCCTCCTTGCCGTGGTTC 143875 Query 76676 TTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATA 76735 || || || || || ||||| | || || | |||||||| || | || | || | | Sbjct 143876 TTCTTCAGCTCCAGAAACTCGAAAACGTCCGCGTGCCATGGCTCCAAGTAGACAGCAAAA 143935 Query 76736 ACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTC 76795 | || ||||| ||||| || || | ||||||||||||| ||| | || | Sbjct 143936 GCTCCTTTGCGTTTGCCTCCTCCTTGGTCGACGTATCTGGCAGTGTCGTTAAAGACGCGA 143995 Query 76796 AACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCA 76855 | ||| || || | ||||| || || ||||| |||||| || || || | ||| Sbjct 143996 AGCATCGGGATGAGACCGTTCGACGTGCCATTAGTTCCACGGATGTAGCTGTGCGAGGCA 144055 Query 76856 CGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGT 76915 || || | | ||||| || || || || || ||||| | || || | Sbjct 144056 CGGATTGTGTGTACGCTGAGGCCGATGCCACCAGCGGCCTTGGAGATCAAGGCGCATTGC 144115 Query 76916 TTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || | ||||| ||||||||||| || || || ||| |||| | || | ||| ||| | Sbjct 144116 TTTAGGGTGTCGTAGATGCCCTCGATGCTGTCCTCCCTCATCGTGAGCAAAAAGCAGGAA 144175 Query 76976 GACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCAT 77035 || | ||| | | | || || || || || | || || | || ||||| || | Sbjct 144176 GAGAGTTGCGGCCGCTCTGTGCCGGCGTTGAAGAGAGTGGGGGTGGCGTGAGTAAAGTAG 144235 Query 77036 TTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTC--TATATCCCATTGATGAATTC 77093 | || | |||||||| || ||||| | || | | | |||||| ||| || | Sbjct 144236 AGGTTGGACATGAGATTGTAGGTCTCAATGGCAGCAGCAATGTCTCCCAT--ATGGATGC 144293 Query 77094 CTACAGCGACACGCATCAACATATGCTGAGG 77124 | | || || ||||| | ||| || ||||| Sbjct 144294 CGATGGCAACTCGCATGATCATGTGTTGAGG 144324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712803407215680