Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq319 196 6e-45 seq58 86.0 7e-12 >seq319 Length=25483 Score = 196 bits (216), Expect = 6e-45 Identities = 578/885 (65%), Gaps = 31/885 (4%) Strand=Plus/Minus Query 53704 TGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 53763 ||| ||||| || |||||||||||||| | |||| | | |||||| || || || Sbjct 7504 TGCGATAGAGGCGAGATTACAAACGGCAATTTCATCTGGTGATGTATATTGAATGATTTC 7445 Query 53764 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 53823 || ||||||||||||| | ||||| |||||||| | |||||| || || || Sbjct 7444 TGTACAAAGATTACTACTACTAATGGTACCTAAATTCTTTTGATTGGATTTGGCATTGCA 7385 Query 53824 CGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTT 53883 ||||||||||| | |||||||| ||||||||||||| || ||||| ||||| || Sbjct 7384 AGCATCCTTATACAAGATGAATGGTGTACCAGTTTCAACTTGAGATTCCATAATGGCGAA 7325 Query 53884 CCAGACGACACGAGCCTTTATTATA--GATTTGTATCTCT--------TTTCTCTTTC-- 53931 ||| | | |||| || |||||| || ||| || || | |||| Sbjct 7324 CCAAAGATCTTGAGCTTTAATTATACGTCTTGGTAGGCCTGGTGTGGCTTCATATTTCAA 7265 Query 53932 GTATAGTGTATACAATCGTTCAAACT-CGTCTCCCCAA-ACATTGTCCAATCCAGGACAT 53989 ||| || | | | ||||| | | || || ||| || | || | | Sbjct 7264 GTAGAGAGCACGATGTTGTTCAGAGTGAGTTTCAGCAAGACCTGGTGC-----------T 7216 Query 53990 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 54049 || | ||||| | | | ||| || || | | | || || | |||||||| |||| Sbjct 7215 TCGTTTGGACAAAAGAGAGCCCAATCACCATTTTGTTCGACACGCTCCATAAAGATATCA 7156 Query 54050 GGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT 54108 | |||||| || ||| || || ||||| | ||| ||||| || || || || || Sbjct 7155 CTGACCCAAAGGGC-ATAGAAAAGGTCTCTAGCTCTCATCTCCTCTTTACCAGTGTTTTT 7097 Query 54109 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAAC 54168 || ||||| | ||| | | | ||| | ||||| || |||||||| | || | | Sbjct 7096 CTTGAGATCAATGAATTCAAAGACATCGGCGTGCCATGGCTCCAAGTAAACGGCAAAGGC 7037 Query 54169 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 54228 || | ||| || || ||||| | ||| | ||| || | ||| |||| | | Sbjct 7036 ACCTTTTCTCTTGCCACCACCTTGATCGACGTAACGAGCAGTATCATTGAAAACACGAAG 6977 Query 54229 CATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 54288 |||||| | | ||||||| | ||||||||| || ||||| ||| | ||||| Sbjct 6976 CATTGGTACCAAACCATTGCTAGTACCATTGGTACCACGAATATAACTTTGAGCAGCACG 6917 Query 54289 AATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 54348 ||| ||| || | | ||| || || || || | || ||||| | ||||||| |||| Sbjct 6916 AATTTTATGAACGGCAATACCAATACCACCAGCACTCTTTGAGATGAGTGCGCATTGTTT 6857 Query 54349 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA 54408 || ||||| ||||| || || || ||| || |||| | || || ||||| ||| Sbjct 6856 CAAGGTATCGTAGATACCATCGATTGAATCCTCTTTCATTTGAACTAAGAAACAAGAAGA 6797 Query 54409 CATT--TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 54466 |||| |||||| | || || ||||| |||||||| || | || || || || || Sbjct 6796 CATTTGTGGTGATG--GTGTACCTGCATTGAATAAGGTTGGTGTGGCATGAGTGAATAAT 6739 Query 54467 TTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCT 54526 || || || | | ||||| || | |||||| || || || || ||| || || Sbjct 6738 TTCTCTGATAAACGTTTGTATGTGTTGATAGCAGAATCAATGTCTTCGCCATGGATACCA 6679 Query 54527 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 54571 | || |||||||| |||||||| || || | ||| ||||| ||| Sbjct 6678 ATTGAAACACGCATCAACATGTGTTGTGGACGTTCGACGATTTTG 6634 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||||||||| | | | | || || ||||| ||||||||||| || || |||| | Sbjct 8433 GTGAATTGAATAGCATCAGCGGCTGGACGAGTACGGAGATAGTACATACCAGTCTTTAAA 8374 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || |||||| ||| ||||||||| || ||||||| | | | || ||||| || Sbjct 8373 CCTTTCCTCCATGAGTAGAAATGCATAGAGGTGAGTTTGGCAAAGGTTGGTTCTGCAATG 8314 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 | ||| | | ||| |||||||||||||| || || | || || ||||| | ||| Sbjct 8313 AAAACATTGAAACTTTGGCTTTGATCGATGAAAGCACCACGATCAGCGGCCATATCAATG 8254 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 53022 | || |||| |||||||||||| ||||||||| Sbjct 8253 AGAGTTCTTTGACGAATTTCCCAAACAGTTTTATA 8219 >seq58 Length=51432 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 71765 GTGATAGGTATTGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTATG 71824 || || |||||||||||||| || || || |||||| |||| |||| |||| | | Sbjct 12862 GTAATTGGTATTGATGAAGGTCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGATTTA 12921 Query 71825 GCAAACGAAGGAAAAATAGTTATAGTAGCCGCACTCGATGGGACATTTCAACGTAAACCG 71884 ||||| |||| |||| ||||| | || ||||||||||| ||||| ||| | ||||| Sbjct 12922 GCAAATCAAGGTAAAACCGTTATTATTGCTGCACTCGATGGTACATTCCAAAGAAAACCA 12981 Query 71885 TT 71886 || Sbjct 12982 TT 12983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593708449066560