Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq641 104 2e-17 seq90 91.5 1e-13 seq1199 89.7 4e-13 seq102 89.7 4e-13 >seq641 Length=13309 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | |||||||| || || || || || || ||| ||| | || Sbjct 12970 ATGCAAATCTTTGTTAAAACATTAACTGGTAAGACTATCACTCTTGAAGTTGAAAGCTCA 12911 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | || |||| ||| ||| |||||||||||| | || ||||||| Sbjct 12910 GATAATATTGAAAATGTTAAAACAAAGATTCAAGATAAAGAAGGTATTCCACCAGATCAA 12851 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | || || || || |||||| |||||||| ||| | | |||||||| Sbjct 12850 CAAAGATTGATTTTCGCAGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAAC 12791 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| |||||||| ||||||||| |||| | ||||| |||| || Sbjct 12790 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTCAGATTAAGAGGTGG 12744 >seq90 Length=44396 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || |||||||| ||| | ||||| || || || |||||||| || |||| ||| Sbjct 14203 AAGATGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGT 14262 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 |||| | | | | | || || ||| || ||||||||| | || |||| Sbjct 14263 TCAGACAACATCGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGAT 14322 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 |||||| | ||||||||||| || |||||| | |||||| ||| | ||||||| Sbjct 14323 CAACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTAT 14382 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || |||||||| || || ||| | || ||| ||||| |||| || Sbjct 14383 AACATCCAAAAGGAATCAACCCTCCACTTAGTTTTAAGATTAAGAGGTGG 14432 >seq1199 Length=11192 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | || ||||||||||||| | || ||||| || |||||| | ||| Sbjct 856 GATAAAGAAGGTATCCCACCAGATCAACAAAGATTAATTTTTGCAGGTAAACAATTAGAA 797 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| ||| | | ||||||||||| || || ||||| || || || | || ||| Sbjct 796 GATGGTCGTACTTTATCAGATTACAATATCCAAAAAGAATCCACACTCCATTTAGTTTTA 737 Query 29175 CGATTACGAGGAGG 29188 ||||| ||||||| Sbjct 736 AGATTAAGAGGAGG 723 >seq102 Length=41085 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||||| | || ||||||||||||| | || || || || |||||| | ||| Sbjct 254 GACAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAA 313 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| ||| | | ||||||||||| || || ||||| ||||||||| | || ||| Sbjct 314 GATGGTCGTACTCTTTCTGATTACAATATCCAAAAAGAATCCACTCTTCACTTAGTTTTA 373 Query 29175 CGATTACGAGGAGG 29188 ||||| |||| || Sbjct 374 AGATTAAGAGGTGG 387 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||||| | || ||||||||||||| | || || || || |||||| | ||| Sbjct 482 GACAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAA 541 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| | | |||||||| || || || ||||| ||||||||| |||| | Sbjct 542 GATGGCCGTACTCTCTCTGATTACAACATCCAAAAAGAATCCACTCTTCACTTGGTCCTC 601 Query 29175 CGATTACGAGGAGG 29188 ||||| |||| || Sbjct 602 AGATTAAGAGGTGG 615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428326749548660