Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq641 107 2e-18 seq90 104 2e-17 seq1199 98.7 8e-16 seq102 98.7 8e-16 >seq641 Length=13309 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | |||||||| || || || || || || ||| ||| | || Sbjct 12970 ATGCAAATCTTTGTTAAAACATTAACTGGTAAGACTATCACTCTTGAAGTTGAAAGCTCA 12911 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || | | | || | || ||| ||| |||||||||||| | || ||||||| Sbjct 12910 GATAATATTGAAAATGTTAAAACAAAGATTCAAGATAAAGAAGGTATTCCACCAGATCAA 12851 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | || || || || ||||||||||||||| ||| | | |||||||| Sbjct 12850 CAAAGATTGATTTTCGCAGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAAC 12791 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||| ||||||||| |||| | ||||| |||| || Sbjct 12790 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTCAGATTAAGAGGTGG 12744 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || |||||||||| | || || || || || |||||||||||| Sbjct 13105 GATAAAGAAGGTATTCCTCCAGATCAACAACGTCTCATTTTCGCAGGTAAACAATTGGAA 13046 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | ||| | | ||||| ||||| ||||| ||||| ||||| || |||| | Sbjct 13045 GATGGCCGTACTCTCTCTGATTATAATATCCAAAAAGAATCAACTCTCCATTTGGTACTC 12986 Query 25248 CGATTACGAGGAGG 25261 ||||| |||| || Sbjct 12985 AGATTAAGAGGTGG 12972 >seq90 Length=44396 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || |||||||| ||| | ||||| || || || |||||||| || |||| ||| Sbjct 14203 AAGATGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGT 14262 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 |||| | | | | |||| || ||| || ||||||||| | || |||| Sbjct 14263 TCAGACAACATCGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGAT 14322 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 |||||| | ||||||||||| || |||||||| |||||| ||| | ||||||| Sbjct 14323 CAACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTAT 14382 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || ||||||||||| || || ||| | || ||| ||||| |||| || Sbjct 14383 AACATCCAAAAGGAATCAACCCTCCACTTAGTTTTAAGATTAAGAGGTGG 14432 >seq1199 Length=11192 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || ||||||||||||| | || ||||| || |||||||| ||| Sbjct 856 GATAAAGAAGGTATCCCACCAGATCAACAAAGATTAATTTTTGCAGGTAAACAATTAGAA 797 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| ||| | | ||||||||||| ||||| ||||| || || || | || ||| Sbjct 796 GATGGTCGTACTTTATCAGATTACAATATCCAAAAAGAATCCACACTCCATTTAGTTTTA 737 Query 25248 CGATTACGAGGAGG 25261 ||||| ||||||| Sbjct 736 AGATTAAGAGGAGG 723 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| |||||||||||| | || ||| |||||| | || || || || || ||| Sbjct 1093 AAAATTCAAGATAAAGAAGGTATTCCACCAGACCAACAACGTCTCATTTTCGCTGGTAAA 1034 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||||| |||||| ||| | | |||||||| || ||||| ||||| ||||||||| Sbjct 1033 CAATTAGAAGATGGTCGTACTCTTTCTGATTACAACATCCAAAAAGAATCCACTCTTCAC 974 Query 25239 ATGGTGTTACGATTACGAGGAGG 25261 |||| | ||||| |||| || Sbjct 973 TTGGTCCTCAGATTAAGAGGTGG 951 Score = 86.0 bits (94), Expect = 5e-12 Identities = 165/243 (68%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 25023 AATAGTGTAAAA----ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGC 25078 |||| | ||||| |||||||| || | |||||||| || || |||||||| || Sbjct 1421 AATATTTTAAAACATTATGCAAATTTTTGTTAAAACATTAACTGGTAAAACCATCACATT 1362 Query 25079 CGAAACGGAACCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGG 25138 ||| ||| |||| | | | || | || |||||| ||||||||||| Sbjct 1361 GGAAGTTGAAGGTTCAGATAACATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGG 1302 Query 25139 TGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAAC 25198 | | || ||| |||||| | || || || || || |||||||| |||||| || Sbjct 1301 TATCCCACCAGACCAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTAC 1242 Query 25199 TATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGG 25258 | | | ||||||||||| ||||| ||||| || || || | || ||| ||||| |||| Sbjct 1241 TTTATCAGATTACAATATCCAAAAAGAATCCACACTCCATTTAGTTTTAAGATTAAGAGG 1182 Query 25259 AGG 25261 || Sbjct 1181 TGG 1179 >seq102 Length=41085 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||||||| | || ||||||||||||| | || || || || |||||||| ||| Sbjct 254 GACAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAA 313 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| ||| | | ||||||||||| ||||| ||||| ||||||||| | || ||| Sbjct 314 GATGGTCGTACTCTTTCTGATTACAATATCCAAAAAGAATCCACTCTTCACTTAGTTTTA 373 Query 25248 CGATTACGAGGAGG 25261 ||||| |||| || Sbjct 374 AGATTAAGAGGTGG 387 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||| | || || |||||||| ||| ||| ||| | Sbjct 389 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACCTTGGAAGTTGAAGGTTCT 448 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || | | | || ||||| || ||| || ||||||||| | || ||||||| Sbjct 449 GATAATATTGAAAATGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 508 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | || || || || |||||||| |||||| | ||| | | |||||||| Sbjct 509 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCTCTGATTACAAC 568 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||| ||||| ||||||||| |||| | ||||| |||| || Sbjct 569 ATCCAAAAAGAATCCACTCTTCACTTGGTCCTCAGATTAAGAGGTGG 615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410787928329608