Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1199 176 7e-39 seq102 167 4e-36 seq641 156 6e-33 seq90 150 3e-31 seq23 122 1e-22 >seq1199 Length=11192 Score = 176 bits (194), Expect = 7e-39 Identities = 182/237 (77%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| |||| || || || || ||||| || || |||| | |||| Sbjct 949 ATGCAAATCTTTGTAAAAACTCTCACTGGTAAAACCATCACATTAGAAGTCGAAGGTTCA 890 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||| ||| ||| | ||| ||||| ||||||||||||||||| ||||| |||||| Sbjct 889 GATAACATTGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCAGATCAA 830 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | ||||||||||| ||||||||||| ||| |||| || ||| |||||| ||| Sbjct 829 CAAAGATTAATTTTTGCAGGTAAACAATTAGAAGATGGTCGTACTTTATCAGATTACAAT 770 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATTAAAAA 124774 || ||||||||||| || | ||||| |||||| | ||| |||| || |||||||| Sbjct 769 ATCCAAAAAGAATCCACACTCCATTTAGTTTTAAGATTAAGAGGAGGAAATTAAAAA 713 Score = 172 bits (190), Expect = 8e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || ||| |||| || ||||| || || | || |||||| Sbjct 1405 ATGCAAATTTTTGTTAAAACATTAACTGGTAAAACCATCACATTGGAAGTTGAAGGTTCA 1346 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||| ||| ||| | ||| ||||||||||||||||||||||| ||||| || ||| Sbjct 1345 GATAACATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCAGACCAA 1286 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || ||||| || || ||||||||||| ||| |||| || ||| |||||| ||| Sbjct 1285 CAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTTTATCAGATTACAAT 1226 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| || | ||||| |||||| | ||| |||||||||| Sbjct 1225 ATCCAAAAAGAATCCACACTCCATTTAGTTTTAAGATTAAGAGGTGGTAT 1176 Score = 136 bits (150), Expect = 6e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || || ||||| || || |||| | |||| Sbjct 1177 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACATTAGAAGTCGAAGGTTCA 1118 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||| ||| ||| | ||| ||||||||||||||||||||||| ||||| || ||| Sbjct 1117 GATAACATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCAGACCAA 1058 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || ||||| || || ||||||||||| ||| |||| || | ||||| || Sbjct 1057 CAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAC 998 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| ||| | || ||||| | | ||| ||||||| || Sbjct 997 ATCCAAAAAGAATCCACTCTTCACTTGGTCCTCAGATTAAGAGGTGGCAT 948 >seq102 Length=41085 Score = 167 bits (184), Expect = 4e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || ||||| ||||| || ||||| | |||| | | Sbjct 161 ATGCAAATCTTTGTTAAAACTCTCACTGGCAAGACTATCACCTTAGAGGTCGAAGGTAGT 220 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||| ||| ||| | ||| || |||||||| ||||||||||| ||||| |||||| Sbjct 221 GATAACATTGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 280 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | ||||| || || ||||||||||| ||| |||| || | ||||| ||| Sbjct 281 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAT 340 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| ||| | || || |||||| | ||| |||||||||| Sbjct 341 ATCCAAAAAGAATCCACTCTTCACTTAGTTTTAAGATTAAGAGGTGGTAT 390 Score = 143 bits (158), Expect = 4e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || || || || || || ||||| | |||| | | Sbjct 617 ATGCAAATCTTTGTTAAAACCCTCACTGGAAAGACCATCACCTTAGAGGTCGAAGGTAGT 676 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||| ||| ||| | ||| || |||||||| ||||||||||| ||||| |||||| Sbjct 677 GATAACATTGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 736 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || ||||| || || ||||||||||| ||| |||| || | ||||| || Sbjct 737 CAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAAC 796 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767 || ||||||||||| ||| | || |||||| | | || ||||||||| Sbjct 797 ATCCAAAAAGAATCCACTCTTCACTTGGTTCTCAGATTGAGAGGTGGTA 845 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || || ||||| || || | || |||||| | Sbjct 389 ATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACCTTGGAAGTTGAAGGTTCT 448 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||| ||| ||| | || || |||||||| ||||||||||| ||||| |||||| Sbjct 449 GATAATATTGAAAATGTCAAGGCCAAGATTCAAGACAAAGAAGGTATTCCACCAGATCAA 508 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | ||||| || || ||||||||||| ||| | || || | ||||| || Sbjct 509 CAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCTCTGATTACAAC 568 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| ||| | || ||||| | | ||| |||||||||| Sbjct 569 ATCCAAAAAGAATCCACTCTTCACTTGGTCCTCAGATTAAGAGGTGGTAT 618 Score = 118 bits (130), Expect = 2e-21 Identities = 115/147 (78%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTT-GCAGGAAA 124681 ||||| ||||||||||||||||| ||||| ||||||||||| | |||||| || || || Sbjct 16 AAAATCCAAGATAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTTCGCTGGTAA 75 Query 124682 ACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCA 124741 |||||||| ||| | || || | ||||| || || ||||||||||| ||| | || Sbjct 76 GCAATTAGAAGATGGCCGTACTCTCTCTGATTACAACATCCAAAAAGAATCCACTCTCCA 135 Query 124742 TTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||| | | ||| |||||||||| Sbjct 136 TTTAGTTCTCAGATTAAGAGGTGGTAT 162 >seq641 Length=13309 Score = 156 bits (172), Expect = 6e-33 Identities = 177/232 (76%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 |||||||| ||| | || ||| |||| || || ||||| ||| | || ||||| || | Sbjct 12970 ATGCAAATCTTTGTTAAAACATTAACTGGTAAGACTATCACTCTTGAAGTTGAAAGCTCA 12911 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||| ||| ||| |||||||| || |||||||||||||||||||| ||||| |||| Sbjct 12910 -GATAATATTGAAAATGTTAAAACA-AAGATTCAAGATAAAGAAGGTATTCCACCAGATC 12853 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||||| | ||||| ||||| |||||||| || ||| |||| || | ||||| | Sbjct 12852 AACAAAGATTGATTTTCGCAGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACA 12793 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | |||||||| ||||| ||| | || ||||| | | ||| |||||||||| Sbjct 12792 ACATTCAAAAGGAATCCACTCTTCACTTGGTCCTCAGATTAAGAGGTGGTAT 12741 Score = 149 bits (164), Expect = 9e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || || ||||| || || | || |||||| | | Sbjct 13198 ATGCAAATTTTTGTTAAAACCCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGT 13139 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | || ||| |||| ||||| ||||||||||||||||| || || |||||| Sbjct 13138 GACAACATCGAAAATGTAAAGGCTAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 13079 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || ||||| ||||| |||||||| || ||| | || || | ||||||||| Sbjct 13078 CAACGTCTCATTTTCGCAGGTAAACAATTGGAAGATGGCCGTACTCTCTCTGATTATAAT 13019 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||||||| | |||||||| | | ||| |||||||||| Sbjct 13018 ATCCAAAAAGAATCAACTCTCCATTTGGTACTCAGATTAAGAGGTGGTAT 12969 Score = 120 bits (132), Expect = 5e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || || ||||| || || | || |||||| | | Sbjct 12742 ATGCAAATCTTTGTTAAAACCCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGT 12683 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||| ||| ||| | ||| || || ||||||||||||||||| ||||| |||||| Sbjct 12682 GATAACATTGAGAATGTTAAAGCCAAGATCCAAGATAAAGAAGGTATTCCACCAGATCAA 12623 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || ||||| ||||| |||||||| || ||| |||| || | ||||| || Sbjct 12622 CAACGTCTCATTTTCGCAGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTACAAC 12563 Query 124719 ATTCAAAAA 124727 ||||||||| Sbjct 12562 ATTCAAAAA 12554 Score = 87.8 bits (96), Expect = 3e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||| | || ||||| ||||| |||||||| || ||| |||| || | ||||| Sbjct 13309 CAACAACGTCTCATTTTCGCAGGTAAACAATTGGAAGATGGTCGTACTCTTTCTGATTAC 13250 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775 || |||||||||||||||||| | ||||| || | | ||| |||||||||| ||| | Sbjct 13249 AACATTCAAAAAGAATCAACTCTCCATTTAGTACTCAGATTAAGAGGTGGTATGCAAATT 13190 Query 124776 T 124776 | Sbjct 13189 T 13189 >seq90 Length=44396 Score = 150 bits (166), Expect = 3e-31 Identities = 176/236 (75%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || |||| || ||||| || ||| | || |||||| | Sbjct 14206 ATGCAAATCTTCGTTAAAACCTTAACTGGTAAAACCATCACTCTCGAAGTTGAAGGT--T 14263 Query 124599 GATACAATTTCTAATT--TAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | |||| || || | ||| || |||||||| ||||||||||| ||||| |||| Sbjct 14264 CAGACAACATCGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGTATCCCACCAGATC 14323 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||| | ||||| ||||| || ||||||||||| ||| |||| || ||| ||||||| Sbjct 14324 AACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGATTATA 14383 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772 | || ||||| |||||||| | || || |||||| | ||| ||||||||||| || Sbjct 14384 ACATCCAAAAGGAATCAACCCTCCACTTAGTTTTAAGATTAAGAGGTGGTATTGAA 14439 >seq23 Length=58329 Score = 122 bits (134), Expect = 1e-22 Identities = 105/130 (81%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 124638 GAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGT 124697 ||||| |||||| ||||||||||| | | |||||||| | ||||||||| |||||| Sbjct 22038 GAAGGAATACCATTAGATCAACAAAGATTACTATTTGCAGGTAGACAATTAGAAGATAGT 22097 Query 124698 CGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTA 124757 |||||||| |||||||||||||||||||||| || || ||||| || ||| | ||| Sbjct 22098 AGAACATTAAAAGATTATAATATTCAAAAAGAGAGTACATTACATTTAGTATTAAGATTA 22157 Query 124758 CGAGGTGGTA 124767 || ||||||| Sbjct 22158 CGTGGTGGTA 22167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755439266649600