Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq102 111 1e-19 seq1199 107 2e-18 >seq102 Length=41085 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | ||||| | |||||||| | || || |||||||| ||||||||||| Sbjct 845 TACCACCTCTCAATCTGAGAACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAG 786 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || | ||||| |||||| | |||||||| || ||||| || | Sbjct 785 AGAGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTG 726 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| ||| || |||||| | ||| | | | || | | |||| Sbjct 725 GAATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCAATGTTATCACTACCTTCGA 666 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | || || || || || ||||| ||||| || ||||| Sbjct 665 CCTCTAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAAGATTTGCAT 617 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | |||||| | |||||||| | || || |||||||| ||||||||||| Sbjct 617 TACCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAG 558 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || | ||||| |||||| | || | | || ||||| || | Sbjct 557 AGAGAGTACGGCCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTG 498 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| ||| || || || | ||| | | || | | || | Sbjct 497 GAATACCTTCTTTGTCTTGAATCTTGGCCTTGACATTTTCAATATTATCAGAACCTTCAA 438 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | ||||| || || |||||||| ||||| || ||||| Sbjct 437 CTTCCAAGGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 389 >seq1199 Length=11192 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || | |||||| | |||||||| | || || |||||||| ||||||||||| Sbjct 951 CCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAA 1010 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || ||| || | ||||| |||||| | |||||||| || || || || || Sbjct 1011 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGA 1070 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || || || ||| |||||| |||||| | ||| | | | || | | ||||| Sbjct 1071 ATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCGACT 1130 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | ||||| || || |||||||| ||||| || ||||| Sbjct 1131 TCTAATGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 1177 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | |||||| || || || |||| ||| || |||||||| || |||||||| Sbjct 723 CCTCCTCTTAATCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATATTGTAATCTGAT 782 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || ||| || | ||||| || || | || | | || ||||| || || Sbjct 783 AAAGTACGACCATCTTCTAATTGTTTACCTGCAAAAATTAATCTTTGTTGATCTGGTGGG 842 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || || || ||| ||||| ||| || | ||| | | | || | | ||||| Sbjct 843 ATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCAATGTTATCTGAACCTTCGACT 902 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | || | ||||| || || |||||||||||||| || |||||| Sbjct 903 TCTAATGTGATGGTTTTACCAGTGAGAGTTTTTACAAAGATTTGCATG 950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433821030890224