Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq641 141 1e-28 seq1199 136 6e-27 seq102 125 1e-23 seq90 107 3e-18 seq23 87.8 3e-12 >seq641 Length=13309 Score = 141 bits (156), Expect = 1e-28 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | ||| | ||||| || | ||| ||||| ||| || || || ||||| || Sbjct 12744 CCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCCTTTTGA-ATGTTGTAATCAGA 12802 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 |||||| | | ||| || |||||||| || || |||||||||||||| ||||| || || Sbjct 12803 AAGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAATCAATCTTTGTTGATCTGGTGG 12862 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||| |||||||||||||| | ||||||| ||||| || Sbjct 12863 AATACCTTCTTTATCTTGAATCTTTGTTTTAACATTTTCAATATTATCTGAGCTTTCAAC 12922 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||| || ||||| || ||||| ||||||||||||| || |||||||| Sbjct 12923 TTCAAGAGTGATAGTCTTACCAGTTAATGTTTTAACAAAGATTTGCAT 12970 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| | ||||||||| | ||| |||||||| ||||||||||| || Sbjct 12972 CCACCTCTTAATCTGAGTACCAAATGGAGAGTTGATTCTTTTTGGATATTATAATCAGAG 13031 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || ||| || |||||||| || || ||||| | | ||| ||||| |||||| Sbjct 13032 AGAGTACGGCCATCTTCCAATTGTTTACCTGCGAAAATGAGACGTTGTTGATCTGGAGGA 13091 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 13092 ATACCTTCTTTATCTTG 13108 >seq1199 Length=11192 Score = 136 bits (150), Expect = 6e-27 Identities = 183/260 (70%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | |||||| || ||||| | || |||||||| ||||| |||||||| Sbjct 1179 CCACCTCTTAATCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATATTGTAATCTGAT 1238 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| ||||||||||| ||||| ||||| | | ||| || || || || Sbjct 1239 AAAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGG 1298 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| ||||||||| ||| ||| Sbjct 1299 ATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCAACT 1358 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTATTAGAAAAA 146290 || | |||||| |||||||| ||||||||||||| || |||||||| | || |||| Sbjct 1359 TCCAATGTGATGGTTTTACCAGTTAATGTTTTAACAAAAATTTGCATAATGTT-TTAAAA 1417 Query 146291 TATTTGTTaaaaaaaaTAAT 146310 || ||| || ||| |||||| Sbjct 1418 TA-TTGATAGAAATAATAAT 1436 Score = 132 bits (146), Expect = 7e-26 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| | |||||| || ||||| | || |||||||| ||||| ||||||| Sbjct 721 TTCCTCCTCTTAATCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATATTGTAATCTG 780 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | ||| | | ||| ||||||||||| || |||||||| |||||||| ||||| || | Sbjct 781 ATAAAGTACGACCATCTTCTAATTGTTTACCTGCAAAAATTAATCTTTGTTGATCTGGTG 840 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | || |||||||||||||| ||||||||| ||| | Sbjct 841 GGATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCAATGTTATCTGAACCTTCGA 900 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||||| |||||| |||||||| || | ||||| | || |||||||| Sbjct 901 CTTCTAATGTGATGGTTTTACCAGTGAGAGTTTTTACAAAGATTTGCAT 949 Score = 120 bits (132), Expect = 5e-22 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| | ||||| || | ||| |||||||| || || ||||| ||| Sbjct 951 CCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAA 1010 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| ||||||||||| ||||| ||||| | | ||| || || || ||| Sbjct 1011 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGA 1070 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| ||||||||| ||| ||| Sbjct 1071 ATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCGACT 1130 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| |||||| |||||||| || | ||||||| || |||||||| Sbjct 1131 TCTAATGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 1177 >seq102 Length=41085 Score = 125 bits (138), Expect = 1e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | |||||| || || || | ||| |||||||| ||||| ||||| ||| Sbjct 387 CCACCTCTTAATCTTAAAACTAAGTGAAGAGTGGATTCTTTTTGGATATTGTAATCAGAA 328 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| ||||||||||| ||||| ||||| |||||||| ||||| || ||| Sbjct 327 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGA 268 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 267 ATACCTTCTTTGTCTTG 251 Score = 125 bits (138), Expect = 1e-23 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| | ||||| || | ||| |||||||| || || ||||| || Sbjct 615 CCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAG 556 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || ||| ||||||||||| ||||| ||||| |||||||| ||||| || ||| Sbjct 555 AGAGTACGGCCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGA 496 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| ||||| | |||| |||| ||| ||| Sbjct 495 ATACCTTCTTTGTCTTGAATCTTGGCCTTGACATTTTCAATATTATCAGAACCTTCAACT 436 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || | ||||| |||||||| || | ||||||| || |||||||| Sbjct 435 TCCAAGGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 389 Score = 114 bits (126), Expect = 2e-20 Identities = 109/138 (79%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| | || ||||| | ||| |||||||| || || ||||| || Sbjct 159 CCACCTCTTAATCTGAGAACTAAATGGAGAGTGGATTCTTTTTGGATGTTGTAATCAGAG 100 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGC-AAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| | || ||| |||||||| || ||||| |||||| |||||||| ||||| || || Sbjct 99 AGAGTACGGCCATCTTCTAATTGCTTACCAGCGAAAAATTAATCTTTGTTGATCTGGTGG 40 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| |||||||||||||| Sbjct 39 AATACCTTCTTTATCTTG 22 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| | ||||| || | ||| |||||||| || || ||||| || Sbjct 843 CCACCTCTCAATCTGAGAACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAG 784 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| ||||||||||| ||||| ||||| | | ||| ||||| || ||| Sbjct 783 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGGA 724 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 723 ATACCTTCTTTGTCTTG 707 >seq90 Length=44396 Score = 107 bits (118), Expect = 3e-18 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | |||||| || || || | || ||||| || || |||||||| || Sbjct 14432 CCACCTCTTAATCTTAAAACTAAGTGGAGGGTTGATTCCTTTTGGATGTTATAATCGGAT 14373 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| ||||||||||| || ||||| || | | ||| ||||| || || Sbjct 14372 AAAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCTGGTGGG 14313 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| ||||| | ||||||| ||| ||| Sbjct 14312 ATACCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCGATGTTGTCTGAACCTTCAACT 14253 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 || || ||||| |||||||| ||||| ||||||| ||| |||||||| || Sbjct 14252 TCGAGAGTGATGGTTTTACCAGTTAAGGTTTTAACGAAGATTTGCATCTT 14203 >seq23 Length=58329 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | | ||||||||| |||||||| ||| ||||| |||||||||||| Sbjct 22165 CCACCACGTAATCTTAATACTAAATGTAATGTACTCTCTTTTTGAATATTATAATCTTTT 22106 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| ||||| ||||||||| | || ||||| | |||||||| ||||| || Sbjct 22105 AATGTTCTACTATCTTCTAATTGTCTACCTGCAAATAGTAATCTTTGTTGATCTAATGGT 22046 Query 146171 ATTCCTTC 146178 |||||||| Sbjct 22045 ATTCCTTC 22038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743509930890240