Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq641 102 6e-17 seq1199 95.1 9e-15 seq102 89.7 4e-13 >seq641 Length=13309 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || ||| || |||| |||||| || ||||| |||||||||||||| || | Sbjct 12744 CCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAA 12803 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||||||||| || || | || | |||||||||||| || Sbjct 12804 AGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAATCAATCTTTGTTGATCTGGTGGA 12863 Query 18219 ACGCCTTCCTTATCGGCAA--TTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| ||||| || |||||| || || | | ||| | | || | || Sbjct 12864 ATACCTTCTTTATCTTGAATCTTTGTT--TTAACATTTTCAATATTATCTGAGCTTTCAA 12921 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| | || || || |||||||| ||||| |||||||| Sbjct 12922 CTTCAAGAGTGATAGTCTTACCAGTTAATGTTTTAACAAAGATTTGCAT 12970 >seq1199 Length=11192 Score = 95.1 bits (104), Expect = 9e-15 Identities = 174/250 (70%), Gaps = 9/250 (4%) Strand=Plus/Plus Query 18080 TACATTTTCTTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTT 18139 || ||||| |||| || |||||| | || ||| | || | || ||||| |||||||| Sbjct 705 TATATTTTTTTTTAATT-TCCTCCTCTTAATCTTAAAACTAAATGGAGTGTGGATTCTTT 763 Query 18140 TTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAG 18199 ||| || ||||| || | | || || |||||| |||||||| || ||| | || | Sbjct 764 TTGGATATTGTAATCTGATAAAGTACGACCATCTTCTAATTGTTTACCTGCAAAAATTAA 823 Query 18200 TCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAA 18258 |||||||||||| || | ||||| ||||| |||| | || ||||| | | ||| Sbjct 824 TCTTTGTTGATCTGGTGGGATACCTTCTTTATCTTGGATTT-TGGCTTTGACATTTTCAA 882 Query 18259 CAGTGTCACCGG---GCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAA 18315 ||| | | | ||| ||| | |||||| |||| || || | |||||||||| Sbjct 883 ---TGTTATCTGAACCTTCGACTTCTAATGTGATGGTTTTACCAGTGAGAGTTTTTACAA 939 Query 18316 AAATTTGCAT 18325 | |||||||| Sbjct 940 AGATTTGCAT 949 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || ||| || |||| |||||| || ||||||||||| |||||||| || | Sbjct 951 CCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAA 1010 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| |||||||| || || | || || | |||||| || || Sbjct 1011 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTGGA 1070 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGG---GCTC 18274 | ||||| ||||| ||||| | || || || | | ||| ||| | | | || Sbjct 1071 ATACCTTCTTTATCTTGAATTT-TGGCTTTAACATTTTCAA---TGTTATCTGAACCTTC 1126 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||| | |||||| |||| || || | ||||| ||||| |||||||| Sbjct 1127 GACTTCTAATGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 1177 >seq102 Length=41085 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || ||| || |||| |||||| || ||||||||||| |||||||| || | Sbjct 615 CCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAG 556 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| |||||||| || || | || | |||||||||||| || Sbjct 555 AGAGTACGGCCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGA 496 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| || || ||| | |||||| | | ||| | | ||| || | Sbjct 495 ATACCTTCTTTGTCTTGAATCTTGGCCTTGACATTTTCAATATTATCAGAACCTTCAACT 436 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| |||| || || | ||||| ||||| |||||||| Sbjct 435 TCCAAGGTGATGGTTTTACCAGTGAGAGTTTTAACAAAGATTTGCAT 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379335807592140