Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq319 205 1e-47 >seq319 Length=25483 Score = 205 bits (226), Expect = 1e-47 Identities = 1154/1825 (63%), Gaps = 86/1825 (5%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||||||||| | | | | || || ||||| ||||||||||| || || |||| | Sbjct 8433 GTGAATTGAATAGCATCAGCGGCTGGACGAGTACGGAGATAGTACATACCAGTCTTTAAA 8374 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || |||||| ||| ||||||||| || ||||||| | | | || ||||| || Sbjct 8373 CCTTTCCTCCATGAGTAGAAATGCATAGAGGTGAGTTTGGCAAAGGTTGGTTCTGCAATG 8314 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 | ||| | | ||| |||||||||||||| || || | || || ||||| | ||| Sbjct 8313 AAAACATTGAAACTTTGGCTTTGATCGATGAAAGCACCACGATCAGCGGCCATATCAATG 8254 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 | || |||| ||||||||||| ||||||||| | | || | || || || | | Sbjct 8253 AGAGTTCTTTGACGAATTTCCCAAACAGTTTTATAGAGTTCTTTCAATTCATCAGGGATG 8194 Query 62286 TT-----TGTATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCAT 62340 || ||| ||||||| |||| || | || || ||||| ||||| Sbjct 8193 CCACCAATGGATT--GAATGGAACCACGTGCTGCAATGATTTGGTTCTTCATCTCTGGTG 8136 Query 62341 TCCATAATTTTCT-CTCGGTTAAAAC-TCTAAGGAGATGCGGGTTAACTACTTGGAATTC 62398 |||| ||| | ||| | | | | |||| | | || || || | | |||||| Sbjct 8135 TCCA-AATACCCAACTCCATGAGATCCTCTA-GTAATTGTTTATTGACAATTGTGAATTC 8078 Query 62399 TCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATT 62458 |||| || || | ||| |||||||||| || || ||||| | | ||||| || Sbjct 8077 ACCAGCTAAAACACGACGACTGTAAATATTTGAAGTGTATGGTTCAAAACATTCATTGTT 8018 Query 62459 TCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAG 62518 || | |||||| ||||| || || ||||| ||||| | || | || | | Sbjct 8017 ACCAAGGATTTGACTTGTTGAAGCGGTTGGCATTGGTGCAATTAAGAGTGAGTTACGTAA 7958 Query 62519 ACCGTATGTTCTGA---TTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTAC 62575 ||| | | ||| | ||||| |||| | | |||||||||| | ||| Sbjct 7957 ACCACCTTTATTGACGATCTTATCCTTTAATTCTGTCCAATTCCAACGTGAACTTGGTGT 7898 Query 62576 AACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATC 62635 |||| |||||| || ||||| ||| || || ||| | | || Sbjct 7897 AACATTCCACATATCATATTGAAGGATACCTTTAGAAGCTGGTGAGCCTTGGAAAGATTC 7838 Query 62636 ATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGT 62695 ||| || || || | || | || | | || ||| ||| || |||||||||| Sbjct 7837 ATAAGGACCATCACGAACGGCCAATTCATGAGAGGCTGTTAAAGCAGCGAAATAAATGGT 7778 Query 62696 TTCAAAGATCTTCTTATTTAGATCTTGT-GCTTCCGGGCTATCAAATGG-ATA---ATTT 62750 |||| ||| | ||||| || | | || | ||||| || || ||| |||| Sbjct 7777 TTCAGCGATTTCAACATTTA-ATTTGGCAGCGGCAACACTATCGAAAGGCATACGCATTT 7719 Query 62751 AAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 62810 | ||| | | || ||||| ||||||| ||||||||| || || | |||||| | Sbjct 7718 TAATGAAAACA----TCTGCTAAACCTTGAATACCAATACCAATTGGACGATGTCTAAGA 7663 Query 62811 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62870 || ||| ||| ||| || || |||||||| ||| ||| || || ||| |||||| Sbjct 7662 TTTGAGGTTTTAGCCTCGATAACTGGATAATAGTTACGATCAATGATAACATTAAGATTT 7603 Query 62871 -CTGACAATTACTTTGACCACATCCTTCAGT--TTGAG----AAAATCAAA--------- 62914 ||| | ||| |||| | || || |||| ||| ||||| Sbjct 7602 ACTGTGA-TTAATTTGGTGATTTCAAAGAGGAATTGATGGTCAAATTCAAACTCTTTTGG 7544 Query 62915 ------TCGCCCATCTATT--ACAAAC--ATGTTCAA--TGCAACAGATGCCAGATTACA 62962 | || || || || || || || | ||| | ||| || |||||||| Sbjct 7543 ATTGGTTGAACCTGCTTTTTGACGAATGAATTTTGGAAGTGCGATAGAGGCGAGATTACA 7484 Query 62963 CACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTT 63022 ||||| | |||| | | |||||| || || || || ||||||||||||| | Sbjct 7483 AACGGCAATTTCATCTGGTGATGTATATTGAATGATTTCTGTACAAAGATTACTACTACT 7424 Query 63023 GATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 63082 || || |||||||| | |||||| || || || ||||||||||| | ||||| Sbjct 7423 AATGGTACCTAAATTCTTTTGATTGGATTTGGCATTGCAAGCATCCTTATACAAGATGAA 7364 Query 63083 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT 63142 ||| ||||||||||||| |||||||| ||||| || ||| | || |||| || || Sbjct 7363 TGGTGTACCAGTTTCAACTTGAGATTCCATAATGGCGAACCAAAGATCTTGAGCTTTAAT 7304 Query 63143 TATAGATTT--GTATCTC--------CTTTCTCTTTCGTATAGAGTATACAATC--GTTC 63190 |||| | | ||| | ||| | |||| ||||| || || |||| Sbjct 7303 TATACGTCTTGGTAGGCCTGGTGTGGCTTCATATTTCAAGTAGAGAGCACGATGTTGTTC 7244 Query 63191 GAACTC-GTCTCCCCAA-ACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 | | || || ||| || | || | ||| | ||||| | | | | Sbjct 7243 AGAGTGAGTTTCAGCAAGACCTGGTGC-----------TTCGTTTGGACAAAAGAGAGCC 7195 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63307 || || || | | | || || | |||||||| |||| | |||||| || ||| || Sbjct 7194 CAATCACCATTTTGTTCGACACGCTCCATAAAGATATCACTGACCCAAAGGGC-ATAGAA 7136 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 || ||||| | ||| ||||| || || || || || || ||||| | ||| | | Sbjct 7135 AAGGTCTCTAGCTCTCATCTCCTCTTTACCAGTGTTTTTCTTGAGATCAATGAATTCAAA 7076 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 | ||| | ||||| || |||||||| | ||| | | || | ||| || || Sbjct 7075 GACATCGGCGTGCCATGGCTCCAAGTAAACGGCAAAGGCACCTTTTCTCTTGCCACCACC 7016 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 ||||| | ||| | ||| || | ||| |||| | | |||||| | | ||| || | Sbjct 7015 TTGATCGACGTAACGAGCAGTATCATTGAAAACACGAAGCATTGGTACCAAACCATT-GC 6957 Query 63488 TA-TACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGAC 63546 || ||||||||||||| ||||| | | | |||||||| ||| || | | || Sbjct 6956 TAGTACCATTGGTACCACGAATATAACTTTGAGCAGCACGAATTTTATGAACGGCAATAC 6897 Query 63547 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTT 63606 | || || || || | || ||||| | ||||||| |||| || || || ||||| || | Sbjct 6896 CAATACCACCAGCACTCTTTGAGATGAGTGCGCATTGTTTCAAGGTATCGTAGATACCAT 6837 Query 63607 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT--TGGTGACGAGTAGT 63664 | || ||| || |||| | || || ||||| ||||||| |||||| | || || Sbjct 6836 CGATTGAATCCTCTTTCATTTGAACTAAGAAACAAGAAGACATTTGTGGTGATG-GT-GT 6779 Query 63665 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63724 || ||||| |||||||| || | || || || || |||| || || | | ||||| Sbjct 6778 ACCTGCATTGAATAAGGTTGGTGTGGCATGAGTGAATAATTTCTCTGATAAACGTTTGTA 6719 Query 63725 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63784 || | ||||| || || || || ||| || || | || |||||||| ||||| Sbjct 6718 TGTGTTGATAGCAGAATCAATGTCTTCGCCATGGATACCAATTGAAACACGCATCAACAT 6659 Query 63785 GTGCTGAGGTCTTTCAACAATTTTG 63809 ||| || || | ||| || |||||| Sbjct 6658 GTGTTGTGGACGTTCGACGATTTTG 6634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629803649540160