Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq319 210 3e-49 seq58 86.0 8e-12 >seq319 Length=25483 Score = 210 bits (232), Expect = 3e-49 Identities = 1153/1824 (63%), Gaps = 84/1824 (5%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||||||||| | | | | || || ||||| ||||||||||| || || |||| | Sbjct 8433 GTGAATTGAATAGCATCAGCGGCTGGACGAGTACGGAGATAGTACATACCAGTCTTTAAA 8374 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || |||||| ||| ||||||||| || ||||||| | | | || ||||| || Sbjct 8373 CCTTTCCTCCATGAGTAGAAATGCATAGAGGTGAGTTTGGCAAAGGTTGGTTCTGCAATG 8314 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 | ||| | | ||| |||||||||||||| || || | || || ||||| | ||| Sbjct 8313 AAAACATTGAAACTTTGGCTTTGATCGATGAAAGCACCACGATCAGCGGCCATATCAATG 8254 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078 | || |||| |||||||||||| ||||||||| | | || | || || || | | Sbjct 8253 AGAGTTCTTTGACGAATTTCCCAAACAGTTTTATAGAGTTCTTTCAATTCATCAGGGATG 8194 Query 65079 TT-----TGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCAT 65133 || ||| ||||||| |||| |||| || || ||||| ||||| Sbjct 8193 CCACCAATGGATT--GAATGGAACCACGTGCTGCAATGATTTGGTTCTTCATCTCTGGTG 8136 Query 65134 TCCATAATTTTCT-CTCGGTTAAAAC-TCTAAGGAGATGCGGATTAACTACTTGAAATTC 65191 |||| ||| | ||| | | | | |||| | | || ||| || | | ||||| Sbjct 8135 TCCA-AATACCCAACTCCATGAGATCCTCTA-GTAATTGTTTATTGACAATTGTGAATTC 8078 Query 65192 TCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATT 65251 |||| || || | ||| |||||||||| || || ||||| | | | ||||| || Sbjct 8077 ACCAGCTAAAACACGACGACTGTAAATATTTGAAGTGTATGGTTCAAAACATTCATTGTT 8018 Query 65252 TCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAG 65311 || | |||||| ||||| || || ||||| ||||| | || | || | | Sbjct 8017 ACCAAGGATTTGACTTGTTGAAGCGGTTGGCATTGGTGCAATTAAGAGTGAGTTACGTAA 7958 Query 65312 ACCGTATGTTCTGA---TTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTAC 65368 ||| | | ||| | ||||| |||| | |||||||||| | ||| Sbjct 7957 ACCACCTTTATTGACGATCTTATCCTTTAATTCTGTCCAATTCCAACGTGAACTTGGTGT 7898 Query 65369 AACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATC 65428 ||| ||| || ||||| ||| || || ||| | | || Sbjct 7897 AACATTCCACATATCATATTGAAGGATACCTTTAGAAGCTGGTGAGCCTTGGAAAGATTC 7838 Query 65429 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGT 65488 || || || || | || | |||| | || ||| ||| || |||||||||| Sbjct 7837 ATAAGGACCATCACGAACGGCCAATTCATGAGAGGCTGTTAAAGCAGCGAAATAAATGGT 7778 Query 65489 TTCGAAGATCTTCTTATTTAGATCTTGT-GCTTCCAGGCTATCAAATGG-ATA---ATTT 65543 ||| ||| | ||||| || | | || | | ||||| || || ||| |||| Sbjct 7777 TTCAGCGATTTCAACATTTA-ATTTGGCAGCGGCAACACTATCGAAAGGCATACGCATTT 7719 Query 65544 AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 65603 | ||| | | |||||||| ||||||| ||||||||| || || | |||||| | Sbjct 7718 TAATGAAAACA----TCTGCTAAACCTTGAATACCAATACCAATTGGACGATGTCTAAGA 7663 Query 65604 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 65663 || ||| ||| ||| || || |||||||| ||| ||| || || ||| |||||| Sbjct 7662 TTTGAGGTTTTAGCCTCGATAACTGGATAATAGTTACGATCAATGATAACATTAAGATTT 7603 Query 65664 -CTGACAATTACTTTGACCACATCCTTCAGT--TTGAG----AAAATCAAA--------- 65707 ||| | ||| |||| | || || |||| ||| ||||| Sbjct 7602 ACTGTGA-TTAATTTGGTGATTTCAAAGAGGAATTGATGGTCAAATTCAAACTCTTTTGG 7544 Query 65708 -----TCGCTCAT-CTATT--ACAAAC--ATGTTCAA--TGCAACAGATGCCAGATTACA 65755 | | | | || || || || || || | ||| | ||| || |||||||| Sbjct 7543 ATTGGTTGAACCTGCTTTTTGACGAATGAATTTTGGAAGTGCGATAGAGGCGAGATTACA 7484 Query 65756 AACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTT 65815 |||||| | |||| | | |||||| || || || || ||||||||||||| | Sbjct 7483 AACGGCAATTTCATCTGGTGATGTATATTGAATGATTTCTGTACAAAGATTACTACTACT 7424 Query 65816 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 65875 ||||| |||||||| | |||||| || || || ||||||||||| | ||||| Sbjct 7423 AATGGTACCTAAATTCTTTTGATTGGATTTGGCATTGCAAGCATCCTTATACAAGATGAA 7364 Query 65876 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT 65935 ||| ||||||||||||| |||||||| ||||| || ||| | || |||| || || Sbjct 7363 TGGTGTACCAGTTTCAACTTGAGATTCCATAATGGCGAACCAAAGATCTTGAGCTTTAAT 7304 Query 65936 TATAGATTT--GTATCTCTT-------TTC-TCTTTCGTATAGTGTATACAATC--GTTC 65983 |||| | | ||| || ||| | |||| ||| | || || |||| Sbjct 7303 TATACGTCTTGGTAGGCCTGGTGTGGCTTCATATTTCAAGTAGAGAGCACGATGTTGTTC 7244 Query 65984 GAACTC-GTCTCCCCAA-ACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 | | || || ||| || | || | ||| | ||||| | | | | Sbjct 7243 AGAGTGAGTTTCAGCAAGACCTGGTGC-----------TTCGTTTGGACAAAAGAGAGCC 7195 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 66101 || || || | | | || || | |||||||| |||| | |||||| || ||| | Sbjct 7194 CAATCACCATTTTGTTCGACACGCTCCATAAAGATATCACTGACCCAAAGGGC-ATAGAA 7136 Query 66102 AAA-TCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 || ||||| | ||| ||||| || || || || || || ||||| | ||| | | Sbjct 7135 AAGGTCTCTAGCTCTCATCTCCTCTTTACCAGTGTTTTTCTTGAGATCAATGAATTCAAA 7076 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220 | ||| ||||| || |||||||| | ||| | | || | ||| || || Sbjct 7075 GACATCGGCGTGCCATGGCTCCAAGTAAACGGCAAAGGCACCTTTTCTCTTGCCACCACC 7016 Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 ||||| | ||| | ||| || | ||| |||| | | |||||| | | ||||||| Sbjct 7015 TTGATCGACGTAACGAGCAGTATCATTGAAAACACGAAGCATTGGTACCAAACCATTGCT 6956 Query 66281 TGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACC 66340 ||||||||||| || ||||| ||| | |||||||| ||| || | | ||| Sbjct 6955 AGTACCATTGGTACCACGAATATAACTTTGAGCAGCACGAATTTTATGAACGGCAATACC 6896 Query 66341 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 66400 || || || || | || ||||| | ||||||| |||| || ||||| ||||| || || Sbjct 6895 AATACCACCAGCACTCTTTGAGATGAGTGCGCATTGTTTCAAGGTATCGTAGATACCATC 6836 Query 66401 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT--TGGTGACGACTAGTT 66458 || ||| || |||| | || || ||||| ||||||| |||||| | || Sbjct 6835 GATTGAATCCTCTTTCATTTGAACTAAGAAACAAGAAGACATTTGTGGTGATG--GTGTA 6778 Query 66459 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 66518 || ||||| |||||||| || | || || || || |||| || || | | ||||| Sbjct 6777 CCTGCATTGAATAAGGTTGGTGTGGCATGAGTGAATAATTTCTCTGATAAACGTTTGTAT 6718 Query 66519 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 66578 || | ||||| || || || || ||| || || | || |||||||| |||||| Sbjct 6717 GTGTTGATAGCAGAATCAATGTCTTCGCCATGGATACCAATTGAAACACGCATCAACATG 6658 Query 66579 TGCTGAGGTCTTTCAACGATCTTG 66602 || || || | ||| ||||| ||| Sbjct 6657 TGTTGTGGACGTTCGACGATTTTG 6634 >seq58 Length=51432 Score = 86.0 bits (94), Expect = 8e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 83796 GTGATAGGTATTGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTATG 83855 || || |||||||||||||| || || || |||||| |||| |||| |||| | | Sbjct 12862 GTAATTGGTATTGATGAAGGTCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGATTTA 12921 Query 83856 GCAAACGAAGGAAAAATAGTTATAGTAGCAGCACTCGATGGGACATTTCAACGTAAACCG 83915 ||||| |||| |||| ||||| | || ||||||||||| ||||| ||| | ||||| Sbjct 12922 GCAAATCAAGGTAAAACCGTTATTATTGCTGCACTCGATGGTACATTCCAAAGAAAACCA 12981 Query 83916 TT 83917 || Sbjct 12982 TT 12983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658158221472480