Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq90 93.3 4e-14 seq102 87.8 2e-12 >seq90 Length=44396 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | ||||||||||| | || || || ||||| |||||||||||| Sbjct 14432 CCACCTCTTAATCTTAAAACTAAGTGGAGGGTTGATTCCTTTTGGATGTTATAATCGGAT 14373 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||||| ||| |||| |||||||| ||||| || || Sbjct 14372 AAAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCTGGTGGG 14313 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | || | ||| | | ||| | |||| | || || Sbjct 14312 ATACCTTCTTTGTC-TTGAATCTTGGCTTTGACGTTTTCGATGTTGTCTGAACCTTCAAC 14254 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || || || ||||| ||||| |||||||| Sbjct 14253 TTCGAGAGTGATGGTTTTACCAGTTAAGGTTTTAACGAAGATTTGCAT 14206 >seq102 Length=41085 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||||| || || |||||||| ||||| ||||| | || | ||||| Sbjct 826 AACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAGAGAGTACGACCATCTTC 767 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | ||||||||||| | || |||||||| ||||| || || || ||||||||||| | Sbjct 766 TAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTGTC-TT 708 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | || | |||| | || || || | || | || ||||| | ||| | |||| Sbjct 707 GAATCTTGGCTTTAACATTTTCAATGTTATCACTACCTTCGACCTCTAAGGTGATGGTCT 648 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || || | ||||| || || ||||||||| Sbjct 647 TTCCAGTGAGGGTTTTAACAAAGATTTGCATA 616 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | ||||||||||||| || || |||||||| || || ||||| Sbjct 387 CCACCTCTTAATCTTAAAACTAAGTGAAGAGTGGATTCTTTTTGGATATTGTAATCAGAA 328 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | ||||||||||| | || | | ||| ||||| || || Sbjct 327 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGA 268 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | || | |||| | || || || | || | || || Sbjct 267 ATACCTTCTTTGTC-TTGAATCTTGGCTTTAACATTTTCAATGTTATCACTACCTTCGAC 209 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | ||| | |||||||| || | ||||| || || ||||||||| Sbjct 208 CTCTAAGGTGATAGTCTTGCCAGTGAGAGTTTTAACAAAGATTTGCATA 160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496053012182400