Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq641 89.7 4e-13 >seq641 Length=13309 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||||| ||| || ||||| | ||| ||||| || | ||||| | || ||| Sbjct 12990 ACCAAATGGAGAGTTGATTCTTTTTGGATATTATAATCAGAGAGAGTACGGCCATCTTCC 13049 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| || || ||||| | || |||||||| | || | ||||||||| || | Sbjct 13050 AATTGTTTACCTGCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGG 13109 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || | || || | | | |||| | | | || || || | || || ||||| Sbjct 13110 ATTTTAGCCTTTACATTTTCGATGTTGTCACTACCTTCAACTTCGAGTGTAATGGTTTTA 13169 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || ||||| |||||||||||||| Sbjct 13170 CCAGTGAGGGTTTTAACAAAAATTTGCAT 13198 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| || | |||| |||||||| | |||||||| || | ||||| | || ||| Sbjct 12762 ACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCC 12821 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 |||||||| || || |||||||||| |||||||| | || | ||||||||| || Sbjct 12822 AATTGTTTACCTGCGAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTATC 12877 Score = 82.4 bits (90), Expect = 6e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 42922 TTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATC 42981 ||||| | |||||||| || | ||||| | || ||||||||||| || || ||||| Sbjct 12555 TTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAATG 12614 Query 42982 AATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCA 43041 | || |||||||| | || | ||||||||| || |||| |||| || | || Sbjct 12615 AGACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGGATCTTGGCTTTAACATTCTCA 12674 Query 43042 ACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAA 43101 | | || | | | || || || | || || ||||| || || || ||||| ||||| Sbjct 12675 ATGTTATCACTACCTTCAACTTCGAGTGTAATGGTTTTACCAGTGAGGGTTTTAACAAAG 12734 Query 43102 ATTTGCAT 43109 |||||||| Sbjct 12735 ATTTGCAT 12742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381361363846776