Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq319 192 8e-44 >seq319 Length=25483 Score = 192 bits (212), Expect = 8e-44 Identities = 572/871 (66%), Gaps = 15/871 (2%) Strand=Plus/Minus Query 71703 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA 71762 ||| || |||||||||||||| | |||| | | |||||| || ||||| || || Sbjct 7498 AGAGGCGAGATTACAAACGGCAATTTCATCTGGTGATGTATATTGAATGATTTCTGTACA 7439 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 ||||||||||| | ||||| |||||||| | |||||| || || || ||||| Sbjct 7438 AAGATTACTACTACTAATGGTACCTAAATTCTTTTGATTGGATTTGGCATTGCAAGCATC 7379 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 71882 |||||| | || || || ||||||||||||| |||||||| ||||| || ||| | Sbjct 7378 CTTATACAAGATGAATGGTGTACCAGTTTCAACTTGAGATTCCATAATGGCGAACCAAAG 7319 Query 71883 GACTCGAGCCTTTATTATA-TTCTT-GTATCTCTTTTCT-CTTTCGTATT--GTGTATAT 71937 || |||| || |||||| |||| ||| || | | ||| |||| ||| | Sbjct 7318 ATCTTGAGCTTTAATTATACGTCTTGGTAGGCCTGGTGTGGCTTCATATTTCAAGTAGAG 7259 Query 71938 AATCGTTCGAACTCG-TCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACAT 71996 | | ||| | | || || | | | || || ||| || ||||| | Sbjct 7258 A---GCACGATGTTGTTCAGAGTGAGTTTCAGCAAGACCTGGTGCTTCGTTTGGACAAAA 7202 Query 71997 CAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 72056 | | ||| || |||| | | || || | |||||||| |||| | |||||| || Sbjct 7201 GAGAGCCCAATCACCATTTTGTTCGACACGCTCCATAAAGATATCACTGACCCAAAGGGC 7142 Query 72057 TATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 72115 ||| || || ||||| | ||| |||||| || || || || || || ||||| | || Sbjct 7141 -ATAGAAAAGGTCTCTAGCTCTCATCTCCTCTTTACCAGTGTTTTTCTTGAGATCAATGA 7083 Query 72116 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGT 72175 | | | | ||| | ||||| || |||||||| | ||| | | || | ||| Sbjct 7082 ATTCAAAGACATCGGCGTGCCATGGCTCCAAGTAAACGGCAAAGGCACCTTTTCTCTTGC 7023 Query 72176 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 72235 || || ||||| | ||| | ||| || | ||| |||| | | |||||| | | || Sbjct 7022 CACCACCTTGATCGACGTAACGAGCAGTATCATTGAAAACACGAAGCATTGGTACCAAAC 6963 Query 72236 CATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTG 72295 ||||| | ||||||||| || ||||| ||| | |||||||| || || | Sbjct 6962 CATTGCTAGTACCATTGGTACCACGAATATAACTTTGAGCAGCACGAATTTTATGAACGG 6903 Query 72296 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 72355 | ||| || || || || | || ||||| | ||||||| |||| || ||||| |||| Sbjct 6902 CAATACCAATACCACCAGCACTCTTTGAGATGAGTGCGCATTGTTTCAAGGTATCGTAGA 6843 Query 72356 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT--TGGTGACG 72413 | || || || ||| || |||| | || || ||||| ||||||| |||||| | Sbjct 6842 TACCATCGATTGAATCCTCTTTCATTTGAACTAAGAAACAAGAAGACATTTGTGGTGATG 6783 Query 72414 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAG 72473 || || ||||| |||||||| || | || || || || |||| || || | | Sbjct 6782 --GTGTACCTGCATTGAATAAGGTTGGTGTGGCATGAGTGAATAATTTCTCTGATAAACG 6725 Query 72474 ATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCAT 72533 ||||| || | ||||| || || || || ||| || || | | |||||||| Sbjct 6724 TTTGTATGTGTTGATAGCAGAATCAATGTCTTCGCCATGGATACCAATTGAAACACGCAT 6665 Query 72534 TAACATATGCTGAGGTCTTTCAACGATCTTG 72564 ||||| || || || | ||| ||||| ||| Sbjct 6664 CAACATGTGTTGTGGACGTTCGACGATTTTG 6634 Score = 116 bits (128), Expect = 5e-21 Identities = 287/429 (67%), Gaps = 11/429 (3%) Strand=Plus/Minus Query 70831 GTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 70890 ||||| ||||||||||| || || |||| ||| |||||| ||| ||||||||| Sbjct 8403 GTACGGAGATAGTACATACCAGTCTTTAAACCTTTCCTCCATGAGTAGAAATGCATAGAG 8344 Query 70891 GTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATG 70950 || ||||||| | || | || || || ||| || ||| | || |||||||||||| Sbjct 8343 GTGAGTTTGGCAAAGGTTGGTTCTGCAATGAAAACATTGAAACTTTGGCTTTGATCGATG 8284 Query 70951 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 71010 || || || | || || ||||| | |||| || |||| |||||||||||| |||| Sbjct 8283 AAAGCACCACGATCAGCGGCCATATCAATGAGAGTTCTTTGACGAATTTCCCAAACAGTT 8224 Query 71011 TTATAAACTCGCTTAATATCTTCTGGAAGG-----TTTGTATTCTGAATGGATCCACCAT 71065 ||||| | | || | || || || | | || || |||||||| |||| Sbjct 8223 TTATAGAGTTCTTTCAATTCATCAGGGATGCCACCAATGGAT--TGAATGGAACCACGTG 8166 Query 71066 CTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTC-TCTCGGTTA-AAACTCT 71123 ||||||| || || || |||||| |||| ||| | ||| | | | |||| Sbjct 8165 CTGCAATGATTTGGTTCTTCATCTCTGGTGTCCA-AATACCCAACTCCATGAGATCCTCT 8107 Query 71124 AAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATT 71183 || | || ||| || | | ||||| |||| || || | |||| |||||||||| Sbjct 8106 -AGTAATTGTTTATTGACAATTGTGAATTCACCAGCTAAAACACGACGACTGTAAATATT 8048 Query 71184 ACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGG 71243 || || ||||| | | ||||| || || | |||||| ||||| || || || Sbjct 8047 TGAAGTGTATGGTTCAAAACATTCATTGTTACCAAGGATTTGACTTGTTGAAGCGGTTGG 7988 Query 71244 CATAGGTGC 71252 ||| ||||| Sbjct 7987 CATTGGTGC 7979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671124334266720