Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20citrinum_20[genbank_20GCA_5F000286055.1_202012-11- 01] 1,772 sequences; 26,251,846 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq90 107 2e-18 seq1199 105 7e-18 seq641 95.1 1e-14 seq102 84.2 2e-11 >seq90 Length=44396 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | |||||||| || | || ||||| ||||| ||||| |||||| Sbjct 14432 CCACCTCTTAATCTTAAAACTAAGTGGAGGGTTGATTCCTTTTGGATGTTATAATCGGAT 14373 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | ||||||||| ||| |||| |||||||| ||||| || || Sbjct 14372 AAAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCTGGTGGG 14313 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| || ||| | | ||| | |||| | ||| ||| Sbjct 14312 ATACCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCGATGTTGTCTGAACCTTCAACT 14253 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || || || ||||| ||||| |||||||| Sbjct 14252 TCGAGAGTGATGGTTTTACCAGTTAAGGTTTTAACGAAGATTTGCAT 14206 >seq1199 Length=11192 Score = 105 bits (116), Expect = 7e-18 Identities = 170/242 (70%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | ||||||||||| | ||| ||||||||||| || ||||||| || Sbjct 1179 CCACCTCTTAATCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATATTGTAAT--CTG 1236 Query 143018 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || | ||| ||||| | |||||||||||| | || |||||||| || || || | Sbjct 1237 ATAAAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATGAGACGTTGTTGGTCTGGTG 1296 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || |||||||| || |||||| ||| | | ||| | | || | ||| | Sbjct 1297 GGATACCTTCTTTATCTTGAATTTTGGCTTTAACATTTTCAATGTTATCTGAACCTTCAA 1356 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATGTTT 143195 |||| | || | || || || || |||||||| || || ||||||||| |||||| Sbjct 1357 CTTCCAATGTGATGGTTTTACCAGTTAATGTTTTAACAAAAATTTGCATA----ATGTTT 1412 Query 143196 TA 143197 || Sbjct 1413 TA 1414 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | ||||||||||| | ||| ||||||||||| || ||||||| || Sbjct 723 CCTCCTCTTAATCTTAAAACTAAATGGAGTGTGGATTCTTTTTGGATATTGTAAT--CTG 780 Query 143018 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || | ||| ||||| | ||||||||| ||| | || | | ||| ||||| || | Sbjct 781 ATAAAGTACGACCATCTTCTAATTGTTTACCTGCAAAAATTAATCTTTGTTGATCTGGTG 840 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || |||||||| || ||||| ||| | | ||| | | || | ||| | Sbjct 841 GGATACCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCAATGTTATCTGAACCTTCGA 900 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| | || | || || || || | |||||||| || |||||||| Sbjct 901 CTTCTAATGTGATGGTTTTACCAGTGAGAGTTTTTACAAAGATTTGCAT 949 >seq641 Length=13309 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | | || || |||| || ||||| ||||| ||||||||||| Sbjct 12744 CCACCTCTTAATCTGAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAA 12803 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | ||||||||| || | |||| | ||| ||||| || || Sbjct 12804 AGAGTACGACCATCTTCCAATTGTTTACCTGCGAAAATCAATCTTTGTTGATCTGGTGGA 12863 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC-TGTTCCACCGTGTCCGTGGGTTCTAC 143136 || |||||||| || | | | ||||||||| | | ||| | | || | | ||| || Sbjct 12864 ATACCTTCTTTATC-TTGAATCTTTGTTTTAACATTTTCAATATTATCTGAGCTTTCAAC 12922 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| ||| | ||||| || || |||||||| || || ||||||||| Sbjct 12923 TTCAAGAGTGATAGTCTTACCAGTTAATGTTTTAACAAAGATTTGCATA 12971 >seq102 Length=41085 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| || |||| || ||||||||||| ||||||||||| | || | ||||| Sbjct 826 AACCAAGTGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAGAGAGTACGACCATCTTC 767 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | |||||||||||| | || |||||||| ||||| || || || ||||||||||| Sbjct 766 TAATTGTTTACCAGCGAAAATGAGACGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTG 707 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| || ||| | | ||| | | || | ||| || || | || | ||||| Sbjct 706 AATCTTGGCTTTAACATTTTCAATGTTATCACTACCTTCGACCTCTAAGGTGATGGTCTT 647 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | ||||| || || ||||||||| Sbjct 646 TCCAGTGAGGGTTTTAACAAAGATTTGCATA 616 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | |||||||| |||| || ||||||||||| || |||||||| Sbjct 387 CCACCTCTTAATCTTAAAACTAAGTGAAGAGTGGATTCTTTTTGGATATTGTAATCAGAA 328 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | |||||||||||| | || | | ||| ||||| || || Sbjct 327 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATTAATCTTTGTTGATCTGGTGGA 268 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| || ||| | | ||| | | || | ||| || Sbjct 267 ATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCAATGTTATCACTACCTTCGACC 208 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | |||||||| || | ||||| || || ||||||||| Sbjct 207 TCTAAGGTGATAGTCTTGCCAGTGAGAGTTTTAACAAAGATTTGCATA 160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507003169631040